View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3118_low_1 (Length: 766)
Name: NF3118_low_1
Description: NF3118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3118_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 20 - 756
Target Start/End: Original strand, 33435733 - 33436469
Alignment:
| Q |
20 |
gagagggctctaacaatatctgctattagttatttattgattttgtcttgtcaagagaagccttgcctcatgacgttcgcctgtatatttctaagatctt |
119 |
Q |
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| T |
33435733 |
gagagggctctaacaatatctgctattagttatttattgattttgtcttgtcaagagaagccttgcctcatgacgttcgcctgtatatttctaagatctt |
33435832 |
T |
|
| Q |
120 |
cttgtctatagaatattagaataattatctttagtttctgtttactttgagnnnnnnnnnn-ctcctacgttgagcacttgattactggatttactgctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33435833 |
cttgtctatagaatattagaataattatctttagtttctatttactttgagtttttttttttctcctacgttgagcacttgattactggatttactgctg |
33435932 |
T |
|
| Q |
219 |
tagatattactcagcattgtttaaagtcagtctttcttcatttaatgnnnnnnnnnnnnnnnnnnnatttccttggtatattaagaacttggtgtaattt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
33435933 |
tagatattactcagcattgtttaaagtcagtctttcttcatttaatgtttttttttttgtttattaatt-ccttggtatattaagaacttggtgtaattt |
33436031 |
T |
|
| Q |
319 |
gttgcaaacatgtgtaagatggataaattctctaatatttagtgttggctttccaattagataccgatttccatgatgctgtgtgattgattgtgaattg |
418 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
33436032 |
gttgcaaacatgtgtaagatagataaattctctaatatttagtgttggctttccaattagataccgatttccatgatgccgtgtgattgattgtgcattg |
33436131 |
T |
|
| Q |
419 |
accatttaggcatttacacttgatgcatacaaacttgatttagcaacaatcatatgcactaacagttaactaaacacagataccttctattataccccac |
518 |
Q |
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| T |
33436132 |
accatttaggcatttacacttgatgcatacaaacttgatttagcaacaatcatatgcactaacagttaactaaacacagataccttctattataccccac |
33436231 |
T |
|
| Q |
519 |
tgttctgacacttagagtaattgttattcatagatacttttgtatttacgagtcctgttcaacgctagaatgtggtgcctgatttgtttagagtgacatc |
618 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33436232 |
tgttctaacacttagagtaattgttattcatagatacttttgtatttacgagtcctgttcaacgctagaatgtggtgcctgatttgtttagagtgacatc |
33436331 |
T |
|
| Q |
619 |
aatatcttactttatgatcatatatttctccttgggtgttaatattgatattatcaacatgtcttgtttttgtagctgaggaatctgttgtgggcaacat |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33436332 |
aatatcttactttatgatcatatatttctccttgggtgttaatattgatattatcaacatgtcttgtttttgtagctgaggaatctgttgtgggcaacat |
33436431 |
T |
|
| Q |
719 |
caaagcatgatgtttaccttatgcaaaactactctgtg |
756 |
Q |
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| T |
33436432 |
caaagcatgatgtttaccttatgcaaaactactctgtg |
33436469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 574 - 751
Target Start/End: Complemental strand, 33770764 - 33770588
Alignment:
| Q |
574 |
tgttcaacgctagaatgtggtgcctgatttgtttagagtgacatcaatatcttactttatgatcatatatttctccttgggtgttaatattgatattatc |
673 |
Q |
| |
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||||||| ||| ||||||||||| ||| ||||||||| ||| |||||||| ||| |||| ||| ||||||||||| |||||||||||||||||| ||||| |
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| T |
33770764 |
tgttcaatgctggaatgtggtgcttgacttgtttaga-tgatatcaatatattattttacgattatatatttctctttgggtgttaatattgatgttatc |
33770666 |
T |
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| Q |
674 |
aacatgtcttgtttttgtagctgaggaatctgttgtgggcaacatcaaagcatgatgtttaccttatgcaaaactact |
751 |
Q |
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| T |
33770665 |
catgtgtcttgtctttgtagatgaggaatcaattgtgggcaacattgaagtgcgatatataccttatgcaaaactact |
33770588 |
T |
|
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