View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3118_low_10 (Length: 292)
Name: NF3118_low_10
Description: NF3118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3118_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 55727049 - 55727320
Alignment:
| Q |
1 |
ctcttccatatttcgcttcaaccaaacacattgtaaatatgagtatattattttagaaatttaaatattgttttgtcatgttgtgtgaggagggcatagc |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
55727049 |
ctcttccttatttctcttcaaccaaacacagtgtaaatatgattatattattttagaaatttaaatattgttttgtcatgttgtgtgagg---gcatagc |
55727145 |
T |
|
| Q |
101 |
catagccaatttcctccacttatatttttgcgnnnnnnnnccatcttttctaaattgcacacttttggtctcttaaattagtacatgaaaataatttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55727146 |
catagccaatttcctccacttatatttttgagctttttttccatcttttctaaattgcacacttttggtctcttaaattagtacatgaaaataatttctt |
55727245 |
T |
|
| Q |
201 |
tcgaaggacagtacatttagcaaaaatatttgacactttaatttctttatcttttttgttccatattgatctctt |
275 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55727246 |
tcgaaggacagtacatttagcaaaaacatttgacactttaatttctttattttttttgttccatattgatctctt |
55727320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University