View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3118_low_11 (Length: 262)

Name: NF3118_low_11
Description: NF3118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3118_low_11
NF3118_low_11
[»] chr7 (11 HSPs)
chr7 (1-261)||(39573955-39574215)
chr7 (191-251)||(39366798-39366858)
chr7 (32-96)||(39366990-39367054)
chr7 (191-251)||(39563542-39563602)
chr7 (27-92)||(39588459-39588524)
chr7 (1-86)||(39621288-39621373)
chr7 (32-96)||(1084088-1084152)
chr7 (32-96)||(39339546-39339610)
chr7 (32-96)||(39354387-39354451)
chr7 (32-96)||(39537261-39537325)
chr7 (207-251)||(39537453-39537497)
[»] chr4 (2 HSPs)
chr4 (13-71)||(2896415-2896473)
chr4 (13-69)||(2887883-2887939)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 39573955 - 39574215
Alignment:
Q  1 ctccatttccatttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatctttaagcttactgacaccttgtattccctttata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39573955 ctccatttccatttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatctttaagcttactgacaccttgtattccctttata 39574054  T
Q  101 aaaaataatgtgcacaaaggtaaatttcatgctacagtagattagagatgtaaaacatacacttcaattcaaaaactttcagaatatttttacctcgaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39574055 aaaaataatgtgcacaaaggtaaatttcatgctacagtagattagagatgtaaaacatacacttcaattcgaaaactttcagaatatttttacctcgaag 39574154  T
Q  201 tatttaattaaatgtgaagaatgacgtccaagtggccccacatatatctctgctcctcctc 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  39574155 tatttaattaaatgtgaagaatgacgtccaagtggccccacatatatctcttgtcctcctc 39574215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 39366858 - 39366798
Alignment:
Q  191 tacctcgaagtatttaattaaatgtgaagaatgacgtccaagtggccccacatatatctct 251  Q
    |||||| ||||| || |||||||  ||||||| | ||||||||||||||||||||||||||    
T  39366858 tacctcaaagtaattgattaaattggaagaattatgtccaagtggccccacatatatctct 39366798  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 39367054 - 39366990
Alignment:
Q  32 acttccaacatccaagttgctggattgtagccatctttaagcttactgacaccttgtattccctt 96  Q
    |||||||||||||| ||||||||||| || || ||||||| ||| || |||||||||| ||||||    
T  39367054 acttccaacatccatgttgctggattataaccgtctttaatcttgctaacaccttgtactccctt 39366990  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 39563542 - 39563602
Alignment:
Q  191 tacctcgaagtatttaattaaatgtgaagaatgacgtccaagtggccccacatatatctct 251  Q
    |||||| ||||| || |||||||  ||||||| | ||||||||||||||||||||||||||    
T  39563542 tacctcaaagtaattgattaaattggaagaattatgtccaagtggccccacatatatctct 39563602  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 39588459 - 39588524
Alignment:
Q  27 tagtaacttccaacatccaagttgctggattgtagccatctttaagcttactgacaccttgtattc 92  Q
    |||| |||||||| ||||||||||||||||| || ||||||||||  ||||  |||||||| ||||    
T  39588459 tagtgacttccaaaatccaagttgctggattatatccatctttaatgttacctacaccttgaattc 39588524  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 39621288 - 39621373
Alignment:
Q  1 ctccatttccatttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatctttaagcttactgacacctt 86  Q
    ||||| || |||||||||| ||||   ||||| |||||||||||||| |||||| ||  | ||||||| || ||||||||||||||    
T  39621288 ctccaattgcatttctttttctgaagaagtaatttccaacatccaagctgctgggttacaaccatcttcaatcttactgacacctt 39621373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 1084088 - 1084152
Alignment:
Q  32 acttccaacatccaagttgctggattgtagccatctttaagcttactgacaccttgtattccctt 96  Q
    |||||||||||||| ||||||||||| || || ||||||| |||  | |||||||| ||||||||    
T  1084088 acttccaacatccatgttgctggattataaccgtctttaatcttggtaacaccttggattccctt 1084152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 39339610 - 39339546
Alignment:
Q  32 acttccaacatccaagttgctggattgtagccatctttaagcttactgacaccttgtattccctt 96  Q
    |||||||||||||| ||||||||||| || || ||||| | ||| || |||||||| ||||||||    
T  39339610 acttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggattccctt 39339546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 39354451 - 39354387
Alignment:
Q  32 acttccaacatccaagttgctggattgtagccatctttaagcttactgacaccttgtattccctt 96  Q
    |||||||||||||| ||||||||||| || || ||||| | ||| || |||||||| ||||||||    
T  39354451 acttccaacatccatgttgctggattataaccgtctttgatctttctaacaccttggattccctt 39354387  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 39537261 - 39537325
Alignment:
Q  32 acttccaacatccaagttgctggattgtagccatctttaagcttactgacaccttgtattccctt 96  Q
    |||||||||||||| ||||||||||| || || | ||||| ||| || ||||||| |||||||||    
T  39537261 acttccaacatccatgttgctggattataaccgtatttaatcttgctaacaccttttattccctt 39537325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 39537453 - 39537497
Alignment:
Q  207 attaaatgtgaagaatgacgtccaagtggccccacatatatctct 251  Q
    |||||||  ||||||| | ||||||||||||||||||||||||||    
T  39537453 attaaattggaagaattatgtccaagtggccccacatatatctct 39537497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 2896415 - 2896473
Alignment:
Q  13 ttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatctttaa 71  Q
    ||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  2896415 ttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaa 2896473  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 2887939 - 2887883
Alignment:
Q  13 ttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatcttt 69  Q
    ||||| |||||| || | ||||||||||||||||||||||||||| |||||||||||    
T  2887939 ttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatcttt 2887883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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