View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3118_low_13 (Length: 242)
Name: NF3118_low_13
Description: NF3118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3118_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 7081771 - 7081553
Alignment:
| Q |
17 |
acttctcaaatccatcattcccttaatctactttgcaaacactcaccttaactttacactctcctcagtttcttacacaagaggtagcttcatcttccca |
116 |
Q |
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| T |
7081771 |
acttctcaaatccatcattcccttaatctactttgcaaacactcaccttaactttacactctcctcagtttcttacacaagaggtagcttcatcttccca |
7081672 |
T |
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| Q |
117 |
aattcacaacctttccctcacacttccttcaatgaagaagtttcttacttagaaaacactatcccttcaaatctttgcttcagaaaagcttccatcatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7081671 |
aattcacaacctttccctcacacttccttcaatgaagaagtttcttacttagaaaacactatcccttcaaatctttgcttcagaaaagcttccatcatgc |
7081572 |
T |
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| Q |
217 |
cttcaaaatcttcatctca |
235 |
Q |
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||||||||||||||||||| |
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| T |
7081571 |
cttcaaaatcttcatctca |
7081553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 49020101 - 49020237
Alignment:
| Q |
90 |
tacacaagaggtagcttcatcttcccaaattcacaacctttccctcacacttccttcaatgaagaagtttcttacttagaaaacactatcccttcaaatc |
189 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||||| ||||| | || |||||| |||||||||||||||||| |
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| T |
49020101 |
tacacaagaggaagcttcatcttcccaaatgcacaacctttcccttacacaagcttcaatgacgaagtaacctatttagaagacactatcccttcaaatc |
49020200 |
T |
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| Q |
190 |
tttgcttcagaaaagcttccatcatgccttcaaaatc |
226 |
Q |
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| T |
49020201 |
tttgccatagaaaagcttccatcatgccctctaaatc |
49020237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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