View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3118_low_2 (Length: 522)

Name: NF3118_low_2
Description: NF3118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3118_low_2
NF3118_low_2
[»] chr8 (16 HSPs)
chr8 (21-511)||(9937984-9938474)
chr8 (439-497)||(18897162-18897220)
chr8 (441-497)||(16852338-16852394)
chr8 (446-497)||(2203495-2203546)
chr8 (446-497)||(3624583-3624634)
chr8 (442-496)||(28560606-28560660)
chr8 (446-496)||(28566108-28566158)
chr8 (446-496)||(28573731-28573781)
chr8 (441-497)||(19703509-19703565)
chr8 (446-497)||(12988431-12988482)
chr8 (446-497)||(20994480-20994531)
chr8 (446-497)||(26688868-26688919)
chr8 (441-497)||(5264542-5264598)
chr8 (446-482)||(18540301-18540337)
chr8 (446-494)||(22268958-22269006)
chr8 (446-482)||(23874419-23874455)
[»] chr7 (16 HSPs)
chr7 (54-176)||(30288244-30288366)
chr7 (443-497)||(20952171-20952225)
chr7 (446-497)||(25021357-25021408)
chr7 (450-497)||(25956314-25956361)
chr7 (446-497)||(26459432-26459483)
chr7 (447-493)||(44146577-44146623)
chr7 (443-497)||(45976945-45976999)
chr7 (437-497)||(17041034-17041094)
chr7 (446-494)||(42836026-42836074)
chr7 (446-494)||(45559203-45559251)
chr7 (446-497)||(43215187-43215238)
chr7 (446-496)||(33869468-33869518)
chr7 (445-497)||(15905695-15905747)
chr7 (446-482)||(39499756-39499792)
chr7 (446-482)||(39631847-39631883)
chr7 (442-482)||(43663132-43663172)
[»] chr2 (11 HSPs)
chr2 (440-497)||(29503268-29503325)
chr2 (442-497)||(33962806-33962861)
chr2 (440-496)||(42602551-42602607)
chr2 (446-497)||(16918600-16918651)
chr2 (446-497)||(42327417-42327468)
chr2 (441-497)||(3697421-3697477)
chr2 (441-497)||(19322766-19322822)
chr2 (446-497)||(42922417-42922468)
chr2 (446-497)||(43964010-43964061)
chr2 (441-497)||(1729814-1729870)
chr2 (449-497)||(12982518-12982566)
[»] chr6 (5 HSPs)
chr6 (446-497)||(12188325-12188376)
chr6 (447-494)||(33724700-33724747)
chr6 (446-494)||(22696-22744)
chr6 (465-497)||(13113983-13114015)
chr6 (441-477)||(15497079-15497115)
[»] chr5 (7 HSPs)
chr5 (446-497)||(21549159-21549210)
chr5 (440-497)||(30883220-30883277)
chr5 (446-497)||(16457813-16457864)
chr5 (446-497)||(22737085-22737136)
chr5 (447-497)||(16436622-16436671)
chr5 (446-480)||(26078090-26078124)
chr5 (443-479)||(14804710-14804746)
[»] chr4 (5 HSPs)
chr4 (446-497)||(37109373-37109424)
chr4 (441-497)||(21344815-21344871)
chr4 (446-497)||(29195098-29195149)
chr4 (465-493)||(26895139-26895167)
chr4 (445-497)||(39030135-39030187)
[»] chr1 (15 HSPs)
chr1 (446-497)||(9165217-9165268)
chr1 (446-497)||(15581163-15581214)
chr1 (454-497)||(31605870-31605913)
chr1 (446-497)||(31794286-31794337)
chr1 (446-497)||(36371473-36371524)
chr1 (446-497)||(44486179-44486230)
chr1 (446-497)||(45235401-45235452)
chr1 (439-497)||(4566544-4566602)
chr1 (447-497)||(4824975-4825025)
chr1 (440-497)||(40257396-40257453)
chr1 (443-479)||(2379425-2379461)
chr1 (445-497)||(17410233-17410285)
chr1 (469-497)||(22188827-22188855)
chr1 (446-494)||(39012294-39012342)
chr1 (446-497)||(50901584-50901636)
[»] chr3 (4 HSPs)
chr3 (443-493)||(40372142-40372192)
chr3 (446-493)||(11092195-11092242)
chr3 (442-497)||(31295454-31295509)
chr3 (446-497)||(42799769-42799820)
[»] scaffold0221 (1 HSPs)
scaffold0221 (446-497)||(2931-2982)
[»] scaffold0211 (1 HSPs)
scaffold0211 (446-497)||(24056-24107)
[»] scaffold0002 (2 HSPs)
scaffold0002 (446-497)||(94993-95044)
scaffold0002 (446-479)||(459886-459919)


Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 21 - 511
Target Start/End: Complemental strand, 9938474 - 9937984
Alignment:
Q  21 attgttaggatatgcttgttacaagttagttagaagttagttgtggaagttacttagctctcaagtaactcagtttgttgtgtatctcagtttgctatat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9938474 attgttaggatatgcttgttacaagttagttagaagttagttgtggaagttacttagctctcaagtaactcagtttgttgtgta-ctcagtttgctatat 9938376  T
Q  121 ataggacctttgtatcaaaccatgattcaataatgagaatacacttttacataacacaacactcgctccagcagatatcgaa-cctatgaggtctatatc 219  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  9938375 ataggagctttgtatcaaaccataattcaataatgagaatacacttttacataacacaacactcgctccagcagatatcgaaacctatgaggtccatatc 9938276  T
Q  220 tgattcagtttgagtataagctaatgttctgaaatgagcatgtttgacggtgatcatcgaactggtaatttctgagtgttacttatatatatttcagatt 319  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9938275 tgattcagtctgagtataagctaatgttctgaaatgagcatgtttgacggtgatcatcgaactggtaatttctgagtgttacttatacatatttcagatt 9938176  T
Q  320 tataatatgaaacatgttacttttgtttggactattttaaaattcaaaaagttttgaaacggaaattacaataatttaatgtcaaaacacatggactttg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9938175 tataatatgaaacatgttacttttgtttggactattttaaaattcaaaaagttttgaaacggaaattacaataatttaatgtcaaaacacatggactttg 9938076  T
Q  420 agtttttaaatattccgattataaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctcatctcctgtttcat 511  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  9938075 agtttttaaatattccgattataaatccacttgggttggtctaatggtattggtttgggaccttgaagtgtgctcctcgtctcatgtttcat 9937984  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 439 - 497
Target Start/End: Original strand, 18897162 - 18897220
Alignment:
Q  439 tataaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||  ||||||||||||    
T  18897162 tataaacccacttgggttggcctagtggtgttggtttgggaccttagagtgtgctcctc 18897220  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 16852338 - 16852394
Alignment:
Q  441 taaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  16852338 taaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 16852394  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 2203495 - 2203546
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  2203495 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 2203546  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 3624583 - 3624634
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  3624583 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 3624634  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 28560606 - 28560660
Alignment:
Q  442 aaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcct 496  Q
    ||||||||||||||||  ||| ||||||||||||||||||||  |||||||||||    
T  28560606 aaatccacttgggttgaactagtggtattggtttgggaccttagagtgtgctcct 28560660  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 28566108 - 28566158
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcct 496  Q
    |||||||||||| |||| ||||||||||||||||||||  |||||||||||    
T  28566108 ccacttgggttgacctagtggtattggtttgggaccttagagtgtgctcct 28566158  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 28573731 - 28573781
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcct 496  Q
    |||||||||||| |||| ||||||||||||||||||||  |||||||||||    
T  28573731 ccacttgggttgacctagtggtattggtttgggaccttagagtgtgctcct 28573781  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 497
Target Start/End: Complemental strand, 19703565 - 19703509
Alignment:
Q  441 taaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||| ||||||||||||||||| ||||||||| |||||||||   ||||||||||||    
T  19703565 taaacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctc 19703509  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 12988431 - 12988482
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||| |||||||| ||||||||| |||| |||| ||||||||||||||    
T  12988431 ccacttggattggcctagtggtattggcttggaacctggaagtgtgctcctc 12988482  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 20994531 - 20994480
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||  ||||||||| | ||||||||||||    
T  20994531 ccacttgggttggcctagtggtattgacttgggacctgggagtgtgctcctc 20994480  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 26688868 - 26688919
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||  |||| |||| ||||||||||| ||||||||||||    
T  26688868 ccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctc 26688919  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 5264542 - 5264598
Alignment:
Q  441 taaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||| ||||||||||||||||| ||||||||| |||| |||| | | ||||||||||    
T  5264542 taaacccacttgggttggcctagtggtattggcttggaacctgggaatgtgctcctc 5264598  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 18540301 - 18540337
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggacct 482  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  18540301 ccacttgggttggcctagtggtattggcttgggacct 18540337  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 22269006 - 22268958
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctc 494  Q
    ||||||||||||||||  |||| |||| ||||||||||| |||||||||    
T  22269006 ccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctc 22268958  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 23874455 - 23874419
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggacct 482  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  23874455 ccacttgggttggcctagtggtattggcttgggacct 23874419  T

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Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 30288244 - 30288366
Alignment:
Q  54 aagttagttgtggaagttacttagctctcaagtaactcag-tttgttgtgtatctcagtttgctatatataggacctttgtatcaaaccatgattcaata 152  Q
    ||||||||| | ||||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||||| |   ||||| |||||||| ||||||||    
T  30288244 aagttagttttagaagttacttagcttgcaagtaactcagttttgtagtgtatctcagtttgctatatatagcagtcttgtaccaaaccat-attcaata 30288342  T
Q  153 atgagaatacacttttacataaca 176  Q
    ||||||||| | |||||| |||||    
T  30288343 atgagaataaatttttacctaaca 30288366  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 20952225 - 20952171
Alignment:
Q  443 aatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||    
T  20952225 aatccacttgggttgacctgatggtattggtttgggacctgggagtgtgctcctc 20952171  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 25021408 - 25021357
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  25021408 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 25021357  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 25956361 - 25956314
Alignment:
Q  450 ttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  25956361 ttgggttggcctagtggtattggcttgggaccttggagtgtgctcctc 25956314  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 26459483 - 26459432
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  26459483 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 26459432  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 493
Target Start/End: Complemental strand, 44146623 - 44146577
Alignment:
Q  447 cacttgggttggcctaatggtattggtttgggaccttgaagtgtgct 493  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||    
T  44146623 cacttgggttggcctagtggtgttggtttgggaccttggagtgtgct 44146577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 45976999 - 45976945
Alignment:
Q  443 aatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||||||||||||||| ||||||||| ||| ||||| | ||||||||||||    
T  45976999 aatccacttgggttggcctagtggtattggcttgtgacctgggagtgtgctcctc 45976945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 497
Target Start/End: Complemental strand, 17041094 - 17041034
Alignment:
Q  437 attataaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||| ||||||||||||| ||| ||| ||||| |||||| || ||||||||||||||    
T  17041094 attataaacccacttgggttggtctagtggcattggcttgggatctggaagtgtgctcctc 17041034  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 42836074 - 42836026
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctc 494  Q
    ||||||||||||||||| ||||||||| ||||||||| | |||||||||    
T  42836074 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctc 42836026  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 494
Target Start/End: Original strand, 45559203 - 45559251
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctc 494  Q
    ||||||||||||||||| ||||||||| |||| |||||| |||||||||    
T  45559203 ccacttgggttggcctagtggtattggcttggaaccttggagtgtgctc 45559251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 43215187 - 43215238
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||| ||| ||||||||| ||||||||| | ||||||||||||    
T  43215187 ccacttgggttggtctagtggtattggcttgggacctcggagtgtgctcctc 43215238  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 33869518 - 33869468
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcct 496  Q
    ||||||||||||||||| | ||||||| ||| ||||| |||||||||||||    
T  33869518 ccacttgggttggcctagtagtattggcttgagacctggaagtgtgctcct 33869468  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 15905747 - 15905695
Alignment:
Q  445 tccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||||||||||||   |||||||| ||||||||| | ||||||||||||    
T  15905747 tccacttgggttggcctggcggtattggcttgggacctgggagtgtgctcctc 15905695  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 39499792 - 39499756
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggacct 482  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  39499792 ccacttgggttggcctagtggtattggcttgggacct 39499756  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 39631847 - 39631883
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggacct 482  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  39631847 ccacttgggttggcctagtggtattggcttgggacct 39631883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 482
Target Start/End: Complemental strand, 43663172 - 43663132
Alignment:
Q  442 aaatccacttgggttggcctaatggtattggtttgggacct 482  Q
    |||||||||||||||||||| |||||||||  |||||||||    
T  43663172 aaatccacttgggttggcctgatggtattgacttgggacct 43663132  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 29503268 - 29503325
Alignment:
Q  440 ataaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  29503268 ataaacccacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctc 29503325  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 497
Target Start/End: Complemental strand, 33962861 - 33962806
Alignment:
Q  442 aaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||||||||||||||||||| ||||||||||||| || | ||||||||||||    
T  33962861 aaatccacttgggttggcctaatgatattggtttgggaactgggagtgtgctcctc 33962806  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 496
Target Start/End: Original strand, 42602551 - 42602607
Alignment:
Q  440 ataaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcct 496  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||| | |||||||||||    
T  42602551 ataaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcct 42602607  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 16918651 - 16918600
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| |||||||||||||||| || | ||||||||||||    
T  16918651 ccacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctc 16918600  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 42327468 - 42327417
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  42327468 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 42327417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 497
Target Start/End: Complemental strand, 3697477 - 3697421
Alignment:
Q  441 taaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||| ||||||||||||| || |||||||||| ||||||||||| || |||||||||    
T  3697477 taaacccacttgggttggtctgatggtattggcttgggaccttggagagtgctcctc 3697421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 19322766 - 19322822
Alignment:
Q  441 taaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||| ||||||||||||  ||| ||||||||||||||||||| | ||||||||||||    
T  19322766 taaacccacttgggttgatctagtggtattggtttgggacctgggagtgtgctcctc 19322822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 42922417 - 42922468
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| |||| |||| | ||||||||||||    
T  42922417 ccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctc 42922468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 43964061 - 43964010
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||| ||| | || |||||||||||||||| ||||||||||||    
T  43964061 ccacttgggttggtctagtagtgttggtttgggaccttggagtgtgctcctc 43964010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 1729814 - 1729870
Alignment:
Q  441 taaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||| ||||||||||||| ||| ||||||||| ||||||| | | ||||||||||||    
T  1729814 taaacccacttgggttgggctagtggtattggcttgggacttgggagtgtgctcctc 1729870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 497
Target Start/End: Complemental strand, 12982566 - 12982518
Alignment:
Q  449 cttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||||||||| ||||||||| ||| |||||  |||||||||||||    
T  12982566 cttgggttggcctagtggtattggattgagacctgcaagtgtgctcctc 12982518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 12188376 - 12188325
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  12188376 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 12188325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 494
Target Start/End: Complemental strand, 33724747 - 33724700
Alignment:
Q  447 cacttgggttggcctaatggtattggtttgggaccttgaagtgtgctc 494  Q
    |||||||| |||||||||||| |||||||||||||||  |||||||||    
T  33724747 cacttgggatggcctaatggtgttggtttgggaccttagagtgtgctc 33724700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 22744 - 22696
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctc 494  Q
    ||||||||||||| ||| |||| |||| ||||||||||| |||||||||    
T  22744 ccacttgggttgggctagtggttttggcttgggaccttggagtgtgctc 22696  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 497
Target Start/End: Complemental strand, 13114015 - 13113983
Alignment:
Q  465 ggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||| ||||||||||||||||||||||||    
T  13114015 ggtattggcttgggaccttgaagtgtgctcctc 13113983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 15497115 - 15497079
Alignment:
Q  441 taaatccacttgggttggcctaatggtattggtttgg 477  Q
    |||| |||||||||||||||||||| |||||||||||    
T  15497115 taaacccacttgggttggcctaatgatattggtttgg 15497079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 21549210 - 21549159
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  21549210 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 21549159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 30883277 - 30883220
Alignment:
Q  440 ataaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||| ||||||||||||| ||| ||||||||| ||||||||| | ||||||||||||    
T  30883277 ataaacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctc 30883220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 16457813 - 16457864
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||| |||||||||  ||||||||| ||||||||||| ||||||||||||    
T  16457813 ccacttaggttggcctggtggtattggcttgggaccttggagtgtgctcctc 16457864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 22737085 - 22737136
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||| ||| ||||||||| ||||||| | ||||||||||||||    
T  22737085 ccacttgggttggtctagtggtattggcttgggacttggaagtgtgctcctc 22737136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 497
Target Start/End: Original strand, 16436622 - 16436671
Alignment:
Q  447 cacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||||||||||| ||||||||| |||||| |||| ||||||||||||    
T  16436622 cacttgggttggcctagtggtattggcttggga-cttggagtgtgctcctc 16436671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 480
Target Start/End: Complemental strand, 26078124 - 26078090
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggac 480  Q
    ||||||||||||||||| |||||||||||||||||    
T  26078124 ccacttgggttggcctagtggtattggtttgggac 26078090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 479
Target Start/End: Complemental strand, 14804746 - 14804710
Alignment:
Q  443 aatccacttgggttggcctaatggtattggtttggga 479  Q
    |||||||||||||||||||| || |||||||||||||    
T  14804746 aatccacttgggttggcctagtgttattggtttggga 14804710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 37109424 - 37109373
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  37109424 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 37109373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 21344815 - 21344871
Alignment:
Q  441 taaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||| |||||||||||||||| ||| | |||| ||||||||||| ||||||||||||    
T  21344815 taaacccacttgggttggcctgatgatgttggcttgggaccttggagtgtgctcctc 21344871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 29195098 - 29195149
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||  |||| |||| ||||||||||| ||||||||||||    
T  29195098 ccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctc 29195149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 493
Target Start/End: Original strand, 26895139 - 26895167
Alignment:
Q  465 ggtattggtttgggaccttgaagtgtgct 493  Q
    |||||||||||||||||||||||||||||    
T  26895139 ggtattggtttgggaccttgaagtgtgct 26895167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 39030187 - 39030135
Alignment:
Q  445 tccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||| ||||||||||  |||| |||| ||||||||||| ||||||||||||    
T  39030187 tccactggggttggcctggtggtgttggcttgggaccttggagtgtgctcctc 39030135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 9165268 - 9165217
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  9165268 ccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 9165217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 15581214 - 15581163
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||  |||| |||| ||||||||||| ||||||||||||    
T  15581214 ccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctc 15581163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 497
Target Start/End: Complemental strand, 31605913 - 31605870
Alignment:
Q  454 gttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||    
T  31605913 gttggcctgatggtgttggcttgggaccttgaagtgtgctcctc 31605870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 31794337 - 31794286
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| ||||||| | | ||||||||||||    
T  31794337 ccacttgggttggcctagtggtattggcttgggacttgggagtgtgctcctc 31794286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 36371473 - 36371524
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| |||| |||| | ||||||||||||    
T  36371473 ccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctc 36371524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 44486230 - 44486179
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||| |||||||| |||| ||||||||| |||||| ||||||||||||    
T  44486230 ccacttggattggcctagtggtgttggtttggaaccttggagtgtgctcctc 44486179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 45235452 - 45235401
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||| || |||||||||||||||||| | | ||||||||||||    
T  45235452 ccacttgggttggtctgatggtattggtttgggacttgggagtgtgctcctc 45235401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 497
Target Start/End: Original strand, 4566544 - 4566602
Alignment:
Q  439 tataaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||| ||||||||||||||||| || |||||| |||| |||| | ||||||||||||    
T  4566544 tataaacccacttgggttggcctagtgatattggcttggaacctgggagtgtgctcctc 4566602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 497
Target Start/End: Original strand, 4824975 - 4825025
Alignment:
Q  447 cacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||||||| || ||||| |||| ||||||||||| ||||||||||||    
T  4824975 cacttgggttggtctgatggtgttggcttgggaccttggagtgtgctcctc 4825025  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 40257396 - 40257453
Alignment:
Q  440 ataaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||| ||||||||||||||||  ||||||||| ||| ||||| | ||||||||||||    
T  40257396 ataaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctc 40257453  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 479
Target Start/End: Original strand, 2379425 - 2379461
Alignment:
Q  443 aatccacttgggttggcctaatggtattggtttggga 479  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  2379425 aatccacttgggttgacctagtggtattggtttggga 2379461  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 17410233 - 17410285
Alignment:
Q  445 tccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||| ||||||||||||| |||||||||||||||| || | |||||| |||||    
T  17410233 tccaattgggttggcctagtggtattggtttgggatctgggagtgtggtcctc 17410285  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 497
Target Start/End: Complemental strand, 22188855 - 22188827
Alignment:
Q  469 ttggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||||||||||||||||||||||||    
T  22188855 ttggtttgggaccttgaagtgtgctcctc 22188827  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 494
Target Start/End: Original strand, 39012294 - 39012342
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctc 494  Q
    |||||| |||||||||| |||| |||| ||||||||||| |||||||||    
T  39012294 ccactttggttggcctagtggtgttggcttgggaccttggagtgtgctc 39012342  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 50901584 - 50901636
Alignment:
Q  446 ccacttgggttggcctaatggt-attggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| |||| ||||| ||||||||| | ||||||||||||    
T  50901584 ccacttgggttggcctagtggtaattggcttgggacctggtagtgtgctcctc 50901636  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 493
Target Start/End: Original strand, 40372142 - 40372192
Alignment:
Q  443 aatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgct 493  Q
    ||||||||| |||||| || ||||||||||||||||||||||||| |||||    
T  40372142 aatccacttaggttggtctgatggtattggtttgggaccttgaagggtgct 40372192  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 493
Target Start/End: Complemental strand, 11092242 - 11092195
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgct 493  Q
    ||||||||||||||||| |||| |||| ||||||||||| ||||||||    
T  11092242 ccacttgggttggcctagtggtgttggcttgggaccttgtagtgtgct 11092195  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 497
Target Start/End: Original strand, 31295454 - 31295509
Alignment:
Q  442 aaatccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||||||||||||  | ||||||||| ||||||| || ||||||||||||||    
T  31295454 aaatccacttgggttggtttgatggtattgatttgggatctagaagtgtgctcctc 31295509  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 42799820 - 42799769
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||  |||| |||| ||||||||||| ||||||||||||    
T  42799820 ccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctc 42799769  T

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Target: scaffold0221 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 2982 - 2931
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    |||||||||||||| |  |||| ||||||||||||||||||||||| |||||    
T  2982 ccacttgggttggcttggtggttttggtttgggaccttgaagtgtgatcctc 2931  T

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Target: scaffold0211 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 24056 - 24107
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||||||||||||  ||||||| | | ||||||||||||    
T  24056 ccacttgggttggcctaatggtattgacttgggacttaggagtgtgctcctc 24107  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 95044 - 94993
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttgggaccttgaagtgtgctcctc 497  Q
    ||||||||||||||||| ||||||||| |||| |||| | ||||||||||||    
T  95044 ccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctc 94993  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 479
Target Start/End: Original strand, 459886 - 459919
Alignment:
Q  446 ccacttgggttggcctaatggtattggtttggga 479  Q
    |||||| |||||||||||||||||||||||||||    
T  459886 ccactttggttggcctaatggtattggtttggga 459919  T

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