View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3118_low_6 (Length: 332)

Name: NF3118_low_6
Description: NF3118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3118_low_6
NF3118_low_6
[»] chr7 (10 HSPs)
chr7 (1-316)||(39573458-39573773)
chr7 (6-212)||(39588069-39588275)
chr7 (7-152)||(39546290-39546435)
chr7 (67-152)||(39354652-39354737)
chr7 (64-152)||(39339828-39339916)
chr7 (7-152)||(1083597-1083742)
chr7 (64-152)||(39536975-39537063)
chr7 (64-152)||(39563083-39563171)
chr7 (67-152)||(39367253-39367338)
chr7 (111-183)||(39620925-39620997)
[»] chr4 (2 HSPs)
chr4 (100-153)||(2896137-2896190)
chr4 (101-149)||(2888178-2888226)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 39573773 - 39573458
Alignment:
Q  1 tgttataggagaaacaaagctcttattgaagatttgagcactacatctcatggttcaaagagcctttattttccttcgaagtactcgaggtcctttttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39573773 tgttataggagaaacaaagctcttattgaagatttgagcactacatctcatggttcaaagagcctttattttccttcgaagtattcgaggtcctttttta 39573674  T
Q  101 tccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatccgttgtacaattcaataaggtttatcttcacaatcgttgtcgccgtgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39573673 tccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatccgttgtacaattcaataaggtttatcttcacaatcgttgtcgccgtgtt 39573574  T
Q  201 gcttgggagcatttactggaaagttgcctccaaaatgtaataagaatcaacttgaaattactaggagttgtatatggttttcaaagttttgcttctaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39573573 gcttgggagcatttactggaaagttgcctccaaaatgtaataagaatcaacttgaaattactaggagttgtatatggctttcaaagttttgcttctaatt 39573474  T
Q  301 aatctaacgtgaattt 316  Q
    ||||||||| ||||||    
T  39573473 aatctaacgcgaattt 39573458  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 39588275 - 39588069
Alignment:
Q  6 taggagaaacaaagctcttattgaagatttgagcactacatctcatggttcaaagagcctttattttccttcgaagtactcgaggtccttttttatccaa 105  Q
    |||||||||||||||||||||| |||| ||||||||| || ||| |  ||||||    |||| ||||||||| |||||||| ||||||||   | |||||    
T  39588275 taggagaaacaaagctcttattcaagaattgagcactccagctcctttttcaaatgaactttgttttccttcaaagtactctaggtccttcgctgtccaa 39588176  T
Q  106 tgtatggcttgtttatggaaacaacattggtcttactggcgcaatccgttgtacaattcaataaggtttatcttcacaatcgttgtcgccgtgttgcttg 205  Q
    | |||| ||||||||||||||||||||||||||||||||||||| ||  |||||||| | ||||||||| ||||||||| | ||||||| ||||||||||    
T  39588175 tttatgacttgtttatggaaacaacattggtcttactggcgcaaccctctgtacaatgccataaggtttctcttcacaaccattgtcgctgtgttgcttg 39588076  T
Q  206 ggagcat 212  Q
    | |||||    
T  39588075 gcagcat 39588069  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 39546435 - 39546290
Alignment:
Q  7 aggagaaacaaagctcttattgaagatttgagcactacatctcatggttc-aaagagcctttattttccttcgaagtactcgaggtccttttttatccaa 105  Q
    |||||||||||| | ||||| ||||| ||||| ||| || ||  |||||| ||||| | |||||||| ||||  |||||||||| |||||||  |  |||    
T  39546435 aggagaaacaaaacacttatcgaagaattgagtactccagcttctggttcgaaagatc-tttattttacttcacagtactcgagatccttttggacacaa 39546337  T
Q  106 tgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39546336 tgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc 39546290  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 39354652 - 39354737
Alignment:
Q  67 tattttccttcgaagtactcgaggtccttttttatccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc 152  Q
    |||||||||||  |||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  39354652 tattttccttcacagtactcgagatccttttttacacaatgtatggcttgcttatggaaacaacattggtcttattggcgcaatcc 39354737  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 39339828 - 39339916
Alignment:
Q  64 ctttattttccttcgaagtactcgaggtccttttttatccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc 152  Q
    |||||||||||| |  |||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  39339828 ctttattttcctactcagtactcgagatccttttttacacaatgtatggcttgcttatggaaacaacattggtcttattggcgcaatcc 39339916  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 1083742 - 1083597
Alignment:
Q  7 aggagaaacaaagctcttattgaagatttgagcactacatctcatggttcaaagagc-ctttattttccttcgaagtactcgaggtccttttttatccaa 105  Q
    |||||||||||||| |||||  |||| ||||| ||| || ||  |||||||| |||  ||||||||| ||||  |||||||||| |||||||  |  |||    
T  1083742 aggagaaacaaagcacttatcaaagaattgagtactccagcttctggttcaa-gagatctttattttacttcacagtactcgagatccttttggacacaa 1083644  T
Q  106 tgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc 152  Q
    || ||||||||||||||||||||||||||||||||||||||||||||    
T  1083643 tgcatggcttgtttatggaaacaacattggtcttactggcgcaatcc 1083597  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 39537063 - 39536975
Alignment:
Q  64 ctttattttccttcgaagtactcgaggtccttttttatccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc 152  Q
    ||||||||| ||||  |||||||||| |||||||  |  ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  39537063 ctttattttacttcacagtactcgagatccttttggacacaatgtatggcttgtttgtggaaacaacattggtcctactggcgcaatcc 39536975  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 39563171 - 39563083
Alignment:
Q  64 ctttattttccttcgaagtactcgaggtccttttttatccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc 152  Q
    ||||||||| ||||  |||||||||| |||||||  |  ||||| |||||||| ||||||||||||||||||||||| |||||||||||    
T  39563171 ctttattttgcttcacagtactcgagatccttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcc 39563083  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 39367253 - 39367338
Alignment:
Q  67 tattttccttcgaagtactcgaggtccttttttatccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc 152  Q
    |||||||||||   ||||||||| ||||| ||||  |||||||| || || ||||||||||||||||||||||| |||||||||||    
T  39367253 tattttccttcacggtactcgagatccttctttacacaatgtatagcctgcttatggaaacaacattggtcttattggcgcaatcc 39367338  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 39620997 - 39620925
Alignment:
Q  111 ggcttgtttatggaaacaacattggtcttactggcgcaatccgttgtacaattcaataaggtttatcttcaca 183  Q
    |||||| ||||||||||||||||||||||||||||| ||||||   |||||| || |||| ||| ||||||||    
T  39620997 ggcttgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttctcttcaca 39620925  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 2896190 - 2896137
Alignment:
Q  100 atccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatccg 153  Q
    ||||||||  |||||||  ||||||||||||||||||| |||||||||||||||    
T  2896190 atccaatgcttggcttgcctatggaaacaacattggtcatactggcgcaatccg 2896137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 2888178 - 2888226
Alignment:
Q  101 tccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaa 149  Q
    |||||||| ||||||| |||||||||||||||||||| || ||||||||    
T  2888178 tccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 2888226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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