View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3118_low_8 (Length: 309)
Name: NF3118_low_8
Description: NF3118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3118_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 28507028 - 28507308
Alignment:
| Q |
19 |
cttcaaccacaatcagcctaattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctc |
118 |
Q |
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| T |
28507028 |
cttcaaccacaatcagcctaattgagtgagcaaccgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctc |
28507127 |
T |
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| Q |
119 |
caacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatga |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
28507128 |
caacactcttgcatttattccttgatctgaaagatacgtcaacaacacaagtggcttctcatgttgaactgcctctaccaccgatgtccaccctgcatga |
28507227 |
T |
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| Q |
219 |
gtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
299 |
Q |
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| T |
28507228 |
gtcaagaatccaccaactgccatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
28507308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 35 - 299
Target Start/End: Original strand, 28494498 - 28494762
Alignment:
| Q |
35 |
cctaattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcattt |
134 |
Q |
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| T |
28494498 |
cctaatcgagtgagccaccatatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcttcttttcttccaacattcttgcattt |
28494597 |
T |
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| Q |
135 |
attccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaa |
234 |
Q |
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| T |
28494598 |
attccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcttctaccaccgatgtccaccctgcatgagtcaagaatccaccaa |
28494697 |
T |
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| Q |
235 |
ctgctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
299 |
Q |
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| T |
28494698 |
ctgccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactccacgtactttg |
28494762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 36 - 299
Target Start/End: Original strand, 28491180 - 28491443
Alignment:
| Q |
36 |
ctaattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcattta |
135 |
Q |
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||||||| | |||| ||||| ||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||||| |||||||| | ||||||| |
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| T |
28491180 |
ctaattgtgcgagccactgagtcacttgtgaatgacccatcttgctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcattta |
28491279 |
T |
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| Q |
136 |
ttccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaac |
235 |
Q |
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|||| || ||| ||||| | |||| |||||||||||||||||| || ||||| || || ||||| |||||||| ||||| |||| ||||| |||||| |
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| T |
28491280 |
ttccctggtctacaagaaatgtcatcaacacaagtggcttctcgttttgaactgcttccaccactgatgtccaacctgcgtgagaaaagaacacaccaat |
28491379 |
T |
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| Q |
236 |
tgctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
299 |
Q |
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||| ||||| ||||||||||||||||| || |||||||||||||||| ||||| || |||||| |
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| T |
28491380 |
tgccatgtgccctaatatcttcatttgcggagcccaatcagtgcatacaactccgcgccctttg |
28491443 |
T |
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