View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-1 (Length: 741)
Name: NF3119A-Insertion-1
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 674; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 18 - 741
Target Start/End: Complemental strand, 36251168 - 36250444
Alignment:
| Q |
18 |
aaagtggcatgatatcaagattaacagtccaaaacgtcttgttttattaagctattcatattacagaaatttcagattgcacaaatgaagaagaaaaata |
117 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36251168 |
aaagtagcatgatatcaagattaacagtccaaaacgtcttgttttattaagctattcatattacagaaatttcagattgcacaaatgaagaagaaaaata |
36251069 |
T |
|
| Q |
118 |
aaagataaaattgattatacctctcttatagcagtaacctcagcatgagcagtgggatctttgtttcttaaaaccatgttatgacagcttacaactactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36251068 |
aaagataaaattgattatacctctcttatagcagtaacctcagcatgagcagtgggatctttgtttcttaaaaccatgttatgacagcttacaactactt |
36250969 |
T |
|
| Q |
218 |
catcatttcgaacaatgactgcaccaaatggacgtccatcaccacattcaacacctttatatgcttcttcaacagcttttgttatgaacttttggtctct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250968 |
catcatttcgaacaatgactgcaccaaatggacgtccatcaccacattcaacacctttatatgcttcttcaacagcttttgttatgaacttttggtctct |
36250869 |
T |
|
| Q |
318 |
atcctctacagctcgtacaagagaaaatacaaagaagtagatttcaggtaataggaattatcatttatgaatcaatatatcatattgctccagctattta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250868 |
atcctctacagctcgtacaagagaaaatacaaagaagtagatttcaggtaataggaattatcatttatgaatcaatatatcatattgctccagctattta |
36250769 |
T |
|
| Q |
418 |
tagaagcaaaatcggtcgttgtgcctgatactgaggcatcattataataacaattgttcactatatgattctttcatatccctgttggcaatttaaaatg |
517 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250768 |
tagaagcaaaattggtcgttgtgcttgatactgaggcatcattataataacaattgttcactatatgattctttcatatccctgttggcaatttaaaatg |
36250669 |
T |
|
| Q |
518 |
tttttagaaagtaaacatcgcctaaatattcatttattcatatatttcagtgtcctatcataaacatgttcatacactttgtaaatagcag-nnnnnnnn |
616 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250668 |
tttttagaaagtaaacatcgcctaaatattcatttattcatatatttcagtgtcctatcataaacatgttcatacactttgtaaatagcagttttttttt |
36250569 |
T |
|
| Q |
617 |
nctgctcttatccaccttattctgactttactcataaatgtgatcattcagtctagtttataactttttatccataatcaaaatgctaactcataatagt |
716 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250568 |
tctgctcttatccaccttattctgacttgactcataaatgtgatcattcagtctagtttataactttttatccataatcaaaatgctaactcataatagt |
36250469 |
T |
|
| Q |
717 |
gcaaatgatactattaattattact |
741 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
36250468 |
gcaaatgatactattaattattact |
36250444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 84 - 308
Target Start/End: Original strand, 36225918 - 36226148
Alignment:
| Q |
84 |
aaatttcagattgcacaaatgaagaagaaaaataaaagataaaattgat---tatacctctcttatagcagtaacctcagcatgagcagtgggatctttg |
180 |
Q |
| |
|
|||| ||||||| |||||| ||| |||||||||||||| ||||||| || | |||||| ||||||||||| | ||||||||||||||||||||||||| |
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| T |
36225918 |
aaatgtcagattacacaaaagaacaagaaaaataaaagttaaaattaatatttttacctcccttatagcagtgatctcagcatgagcagtgggatctttg |
36226017 |
T |
|
| Q |
181 |
tttcttaaaaccatgttatgacagcttacaactacttc---atcatttcgaacaatgactgcaccaaatggacgtccatcaccacattcaacacctttat |
277 |
Q |
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||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| | ||||||| |||| |||||||||| |||||||| ||| || |
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| T |
36226018 |
tttcttaaaaccatgttatgagtgcttacaacaacttcatgatcatttcgaacaatcagtgcaccatatgggtatccatcaccagattcaacagcttcat |
36226117 |
T |
|
| Q |
278 |
atgcttcttcaacagcttttgttatgaactt |
308 |
Q |
| |
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||||||||| ||||| |||| |||||||||| |
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| T |
36226118 |
atgcttctttaacagattttattatgaactt |
36226148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 135 - 327
Target Start/End: Complemental strand, 36234624 - 36234432
Alignment:
| Q |
135 |
tacctctcttatagcagtaacctcagcatgagcagtgggatctttgtttcttaaaaccatgttatgacagcttacaactacttcatcatttcgaacaatg |
234 |
Q |
| |
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|||||||||||||||| | | ||||||||||||||| || |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |
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| T |
36234624 |
tacctctcttatagcaatgatctcagcatgagcagttggctctttgtttcttaaaaacatgttatgacagcttacaataacttcgtcatttcgaacaatc |
36234525 |
T |
|
| Q |
235 |
actgcaccaaatggacgtccatcaccacattcaacacctttatatgcttcttcaacagcttttgttatgaacttttggtctctatcctctaca |
327 |
Q |
| |
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| ||||||| |||| |||||||||| |||||||| ||| ||||||||||| ||||| |||| |||||||||| ||||||||| |||||| |
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| T |
36234524 |
aatgcaccatatgggtatccatcaccagattcaacagcttcatatgcttctttaacagattttattatgaacttgctgtctctatcttctaca |
36234432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 139 - 320
Target Start/End: Complemental strand, 36232003 - 36231840
Alignment:
| Q |
139 |
tctcttatagcagtaacctcagcatgagcagtgggatctttgtttcttaaaaccatgttatgacagcttacaactacttcatcatttcgaacaatgactg |
238 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||| ||| |
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| T |
36232003 |
tctctcataacagtaacctcagcatgagccgtgggatctttgtttcttaaaaccatgttatgactgctaacaactatttcatcattttgaacagtga--- |
36231907 |
T |
|
| Q |
239 |
caccaaatggacgtccatcaccacattcaacacctttatatgcttcttcaacagcttttgttatgaacttttggtctctatc |
320 |
Q |
| |
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| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
36231906 |
---------------tagcaccacattcaacacctttgtatgcttcttcaacagcttttgctatgaactttcggtctctatc |
36231840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 367197 - 367324
Alignment:
| Q |
137 |
cctctcttatagcagtaacctcagcatgagcagtgggatctttgtttcttaaaaccatgttatgacagcttacaactacttcatcatttcgaacaatgac |
236 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
367197 |
cctctcttataggaataatctcagcatgagcagtgggatctttgtttcttaaaaccatgttatgaaagcttacaactacttcatcatttcgaacaatgac |
367296 |
T |
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| Q |
237 |
tgcaccaaatggacgtccatcaccacat |
264 |
Q |
| |
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|| ||||||||| ||||||||||||||| |
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| T |
367297 |
tggaccaaatgggcgtccatcaccacat |
367324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 367333 - 367368
Alignment:
| Q |
294 |
ttttgttatgaacttttggtctctatcctctacagc |
329 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
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| T |
367333 |
ttttgttatgaacttttggtctttatcctctacagc |
367368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 136 - 322
Target Start/End: Complemental strand, 19895378 - 19895192
Alignment:
| Q |
136 |
acctctcttatagcagtaacctcagcatgagcagtgggatctttgtttcttaaaaccatgttatgacagcttacaactacttcatcatttcgaacaatga |
235 |
Q |
| |
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||||||||||| || || || ||||||||||||| || || |||| |||| ||||||||||||||| || ||| ||||||||||| ||| || | |
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| T |
19895378 |
acctctcttattgctgtgacttcagcatgagcagaagggtcagtgttccttagaaccatgttatgacaactagcaataacttcatcattcaaaactataa |
19895279 |
T |
|
| Q |
236 |
ctgcaccaaatggacgtccatcaccacattcaacacctttatatgcttcttcaacagcttttgttatgaacttttggtctctatcct |
322 |
Q |
| |
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| ||||||||||||| |||||| ||||||| ||||||||||| ||||||||||| |||||| ||| || || ||||||||||||| |
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|
| T |
19895278 |
cagcaccaaatggacctccatcttcacattctacacctttataggcttcttcaactgcttttcttaaaaatttatggtctctatcct |
19895192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 320
Target Start/End: Original strand, 51284479 - 51284610
Alignment:
| Q |
189 |
aaccatgttatgacagcttacaactacttcatcatttcgaacaatgactgcaccaaatggacgtccatcaccacattcaacacctttatatgcttcttca |
288 |
Q |
| |
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||||||||| |||||||| |||||||||||||||| ||||||| || |||||||| || | |||||| ||||| || || ||||| ||||||||||| |
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| T |
51284479 |
aaccatgttgtgacagctagcaactacttcatcattgtgaacaataacagcaccaaaagggcctccatctccacaatctactcctttgtatgcttcttcg |
51284578 |
T |
|
| Q |
289 |
acagcttttgttatgaacttttggtctctatc |
320 |
Q |
| |
|
|| ||| || ||| || || ||||||||||| |
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|
| T |
51284579 |
actgctcttcttaaaaatttgtggtctctatc |
51284610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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