View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119A-Insertion-10 (Length: 291)

Name: NF3119A-Insertion-10
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119A-Insertion-10
NF3119A-Insertion-10
[»] chr1 (1 HSPs)
chr1 (8-290)||(48323881-48324163)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 48324163 - 48323881
Alignment:
Q  8 gtgaattcaaatgctgatatacatttctcatattcaggaagtagatggagtgaatttgacacttgatcagactcttggtaattctaacccgcattattca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48324163 gtgaattcaaatgctgatatacatttctcatattcaggaagtagatggagtgaatttgacacttgatcagactcttggtaattctaacccgcattattca 48324064  T
Q  108 agagtattgagggagaaaatggcagctagagatgcagcacacaaggcaatggaggctcgaagagctgctttggtggaggcatcttggtgccgaattttac 207  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48324063 agagtattgagggagaaaatggcagctagagaagcagcacacaaggcaatggaggctcgaagagctgctttggtggaggcatcttggtgccgaattttac 48323964  T
Q  208 gtgccgcgaggtaaagctttatgcaaataaaataggctggacattagttgacggtttaattaaagaaaatgatttacaaatct 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48323963 gtgccgcgaggtaaagctttatgcaaataaaataggctggacattagttgacggtttaattaaagaaaatgatttacaaatct 48323881  T

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