View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3119A-Insertion-12 (Length: 505)
Name: NF3119A-Insertion-12
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-12 |
 | |
|
| [»] chr3 (8 HSPs) |
| |
|
| [»] scaffold1173 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 11391361 - 11390863
Alignment:
| Q |
7 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttgtagaggtccaatcgaaactacttcagttggacacaactttcttaactt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11391361 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagtttgacacaactttcttaactc |
11391262 |
T |
|
| Q |
107 |
gcatactgcctttattggatcgatatcccccgataatgttaatttcttctctttcgagtctattgatattgattcaacccctgcnnnnnnnnnnnnnnnn |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11391261 |
gcatactgcctttattggatcgatatcccccgataatgttaatttcttctctttcgagtctattgatattgattcaacccctgcaaaataaaaataaaaa |
11391162 |
T |
|
| Q |
207 |
tgaatctttcatgttatatggtttgtctttttatttagacaaaaataaaataaaattagatttcattctcaaacaacggagttcaatactatttgaaata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11391161 |
tgaatctttcatgttatatggtttgtctttttatttagacaaaaataaaataaaattagatttcattctcaaacaacggagttcaatactatttgaaata |
11391062 |
T |
|
| Q |
307 |
gttgtaaaataactatttaagnnnnnnnnnnnnnnatataaagttagattgcaatattaatagaccttatcaaattaatttaagttagacccatcttatg |
406 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11391061 |
gttgtaaaataactatttaagttttttttttttaaaaataaagttagattgcaatattaatagaccttatcaaattaatttaagttagagccatcttatg |
11390962 |
T |
|
| Q |
407 |
tcttcaaaaattaaaatcaatcaaaatggtatcgtaagtgaagatggtgaaagattacgagaacatttgatatgtttagttgcacaatcaatcccacta |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390961 |
tcttcaaaaattaaaatcaatcaaaatggtattgtaagtggagatggtgaaagattacgagaacatttgatatgtttagttgcacaatcaatcccacta |
11390863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 11366769 - 11366454
Alignment:
| Q |
8 |
ttgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttgtagaggtccaatcgaaactacttcagttggacacaactttcttaacttg |
107 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| || |||||||| |||| ||||||||||||||| |||| ||||||| ||||||||||||||| |||| |
|
|
| T |
11366769 |
ttgaagtggaataacttcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttg |
11366670 |
T |
|
| Q |
108 |
catactgcctttattggatcgatatcccccgataatgttaatttcttctctttcgagtctattgatattgattcaacccctgc--nnnnnnnnnnnnnnn |
205 |
Q |
| |
|
|| ||| |||||| |||||| |||||||| |||| ||| |||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
11366669 |
cacactacctttactggatcaatatccccagatactgtcaatttcttctctttcgagtctattgataatgattcaaaccctgcaaaataataagaaaaaa |
11366570 |
T |
|
| Q |
206 |
ntgaatctttcatgttatatggtttgtctttttatttagacaaaaataaaataaaattagatttcattctcaaacaacggagttc-aatactatttgaaa |
304 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| ||||| | |||| ||||||| ||||||||| || ||| ||||| |||||||||||||| |
|
|
| T |
11366569 |
atgaatcatttgtgttagatggtttgtctttttatttacacaaaggtcaaattaaattagttttcattcttgaatgacgaagttcaaatactatttgaaa |
11366470 |
T |
|
| Q |
305 |
tagttgtaaaataact |
320 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11366469 |
tagttgtaaaataact |
11366454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 11385315 - 11385000
Alignment:
| Q |
8 |
ttgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttgtagaggtccaatcgaaactacttcagttggacacaactttcttaacttg |
107 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| || |||||||| |||| ||||||||||||||| |||| ||||||| ||||||||||||||| |||| |
|
|
| T |
11385315 |
ttgaagtggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttg |
11385216 |
T |
|
| Q |
108 |
catactgcctttattggatcgatatcccccgataatgttaatttcttctctttcgagtctattgatattgattcaacccctgc--nnnnnnnnnnnnnnn |
205 |
Q |
| |
|
|| ||| |||||| |||||| |||||||| |||| ||| |||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
11385215 |
cacactacctttactggatcaatatccccagatactgtcaatttcttctctttcgagtctattgataatgattcaaaccctgcaaaataataagaaaaaa |
11385116 |
T |
|
| Q |
206 |
ntgaatctttcatgttatatggtttgtctttttatttagacaaaaataaaataaaattagatttcattctcaaacaacggagttc-aatactatttgaaa |
304 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| ||||| | |||| ||||||| ||||||||| || ||| ||||| |||||||||||||| |
|
|
| T |
11385115 |
atgaatcatttgtgttagatggtttgtctttttatttacacaaaggtcaaattaaattagttttcattcttgaatgacgaagttcaaatactatttgaaa |
11385016 |
T |
|
| Q |
305 |
tagttgtaaaataact |
320 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11385015 |
tagttgtaaaataact |
11385000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 11375477 - 11375295
Alignment:
| Q |
8 |
ttgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttgtagaggtccaatcgaaactacttcagttggacacaactttcttaacttg |
107 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| || |||||||| |||| ||||||||||||||| |||| ||||||| ||||||||||||||| |||| |
|
|
| T |
11375477 |
ttgaagtggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttg |
11375378 |
T |
|
| Q |
108 |
catactgcctttattggatcgatatcccccgataatgttaatttcttctctttcgagtctattgatattgattcaacccctgc |
190 |
Q |
| |
|
|| ||| |||||| |||||| |||||||| |||| | | |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11375377 |
cacactacctttactggatcaatatccccagatactatcaatttcttctctttcgagtctattgataatgattcaacccctgc |
11375295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 344 - 489
Target Start/End: Complemental strand, 11384948 - 11384803
Alignment:
| Q |
344 |
ataaagttagattgcaatattaatagaccttatcaaattaatttaagttagacccatcttatgtcttcaaaaattaaaatcaatcaaaatggtatcgtaa |
443 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||| ||| ||||| ||| |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11384948 |
ataaagttagattgtgttagaaatggaccttatcaaattaatgtaacttagagtcatattatatcttcaaaaattaaaatcaatcatgatggtatcgtaa |
11384849 |
T |
|
| Q |
444 |
gtgaagatggtgaaagattacgagaacatttgatatgtttagttgc |
489 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
11384848 |
gtgaagatgataaaagattaccgcaacatttgatatgtttagttgc |
11384803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 344 - 485
Target Start/End: Complemental strand, 11366402 - 11366261
Alignment:
| Q |
344 |
ataaagttagattgcaatattaatagaccttatcaaattaatttaagttagacccatcttatgtcttcaaaaattaaaatcaatcaaaatggtatcgtaa |
443 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||| ||| ||||| ||| |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11366402 |
ataaagttagattgtgttagaaatggaccttatcaaattaatgtaacttagagtcatattatatcttcaaaaattaaaatcaatcatgatggtatcgtaa |
11366303 |
T |
|
| Q |
444 |
gtgaagatggtgaaagattacgagaacatttgatatgtttag |
485 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
11366302 |
gtgaagatgataaaagattaccgcaacatttgatatgtttag |
11366261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 11375265 - 11375163
Alignment:
| Q |
218 |
tgttatatggtttgtctttttatttagacaaaaataaaataaaattagatttcattctcaaacaacggagttcaa-tactatttgaaatagttgtaaaat |
316 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | |||| ||||||| ||||||||| ||| ||| | ||||| |||||| ||||||||||||||||| |
|
|
| T |
11375265 |
tgttagatggtttgtctttttatttacacaaaggtcaaattaaattag-tttcattcttaaatgacgaatttcaaatactatctgaaatagttgtaaaat |
11375167 |
T |
|
| Q |
317 |
aact |
320 |
Q |
| |
|
|||| |
|
|
| T |
11375166 |
aact |
11375163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 11375111 - 11375034
Alignment:
| Q |
344 |
ataaagttagattgcaatattaatagaccttatcaaattaatttaagttagacccatcttatgtcttcaaaaattaaa |
421 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||| ||| ||||| ||| |||| ||||||||||||||| |
|
|
| T |
11375111 |
ataaagttagattgtgttagaaatggaccttatcaaattaatgtaacttagagtcatattatatcttcaaaaattaaa |
11375034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 17192695 - 17193009
Alignment:
| Q |
7 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttgtagaggtccaatcgaaactacttcagttggacacaactttcttaactt |
106 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||||||| |||| |||||||||||| ||||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
17192695 |
attgaagtggaataacttcatttgtatttgttgaccctttcttctcttcttttagaggtccaattgaaactatttcagtttgacacaactttcttagctt |
17192794 |
T |
|
| Q |
107 |
gcatactgcctttattggatcgatatcccccgataatgttaatttcttctctttcgagtctattgatattgattcaacccctgc--nnnnnnnnnnnnnn |
204 |
Q |
| |
|
||| ||| | ||||| ||||| |||||||| |||| ||| ||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
17192795 |
gcacactccttttatcggatcaatatcccctgatattgtcaatttcttctctttccagtctattgatactgattcaacccctgcaaaataaaaaataaaa |
17192894 |
T |
|
| Q |
205 |
nntgaatctttcatgttatatggtttgtctttttatttagacaaaaataaaataaaattagatttcattctcaaacaacggagttcaatactatttgaaa |
304 |
Q |
| |
|
| || |||| ||||||||||||||||||||| ||||| |||||| |||||| ||||||| ||||||| || |||||||||||||| |||||||| |
|
|
| T |
17192895 |
tattaaacttttatgttatatggtttgtcttttaatttacacaaaagtaaaattaaattaggcttcattcacagacaacggagttcaa----atttgaaa |
17192990 |
T |
|
| Q |
305 |
tagttgtaaaataactatt |
323 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
17192991 |
tagttataaaataactatt |
17193009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 17186812 - 17186995
Alignment:
| Q |
7 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttgtagaggtccaatcgaaactacttcagttggacacaactttcttaactt |
106 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||| || |||||||| |||| || ||||||||| || |||| ||||||| ||||||||||||||| ||| |
|
|
| T |
17186812 |
attgaactggaataacttcatttgtatttgttgaatccttcttctcatcttttaaaggtccaattgatactatttcagtttgacacaactttcttagctt |
17186911 |
T |
|
| Q |
107 |
gcatactgcctttattggatcgatatcccccgataatgttaatttcttctctttcgagtctattgatattgattcaacccctgc |
190 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
17186912 |
gcacactgcctttacaggatcaatatcccccgataatgtcaatttcttctctttcgagtctattgctactgattcagcccctgc |
17186995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 488
Target Start/End: Original strand, 17187181 - 17187325
Alignment:
| Q |
344 |
ataaagttagattgcaatattaatagaccttatcaaattaatttaagttagacccatcttatgtcttcaaaaattaaaatcaatcaaaatggtatcgtaa |
443 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||| ||| ||| | ||| |||| ||||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
17187181 |
ataaagttagattgtgttagaaatggaccttatcaaattaatgtaacttatagtcatattatatcttcgaaatttaaaatcaatcatgatggtatcgtaa |
17187280 |
T |
|
| Q |
444 |
gtgaagatggtgaaagattacgagaacatttgatatgtttagttg |
488 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
17187281 |
gtgaagatgataaaagattacagcaacatttgatatgtttagttg |
17187325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 320
Target Start/End: Original strand, 17187025 - 17187128
Alignment:
| Q |
218 |
tgttatatggtttgtctttttatttagacaaaaataaaataaaattagatttcattctcaaacaacggagttcaa-tactatttgaaatagttgtaaaat |
316 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||| | |||| ||||||| ||||||||| || ||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
17187025 |
tgttagatggtttgtctatttatttacacaaaggtcaaattaaattagttttcattctggaatgacgaagttcaattactatttgaaatagttgtagaat |
17187124 |
T |
|
| Q |
317 |
aact |
320 |
Q |
| |
|
|||| |
|
|
| T |
17187125 |
aact |
17187128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1173 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: scaffold1173
Description:
Target: scaffold1173; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 2097 - 1914
Alignment:
| Q |
7 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttgtagaggtccaatcgaaactacttcagttggacacaactttcttaactt |
106 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| || ||||||| |||| || |||||||||||| |||| ||||||| ||||||||||||||| ||| |
|
|
| T |
2097 |
attgaagtggaataacttcatttgtatttgttgaatccttcttcttatcttttaaaggtccaatcgatactatttcagtttgacacaactttcttagctt |
1998 |
T |
|
| Q |
107 |
gcatactgcctttattggatcgatatcccccgataatgttaatttcttctctttcgagtctattgatattgattcaacccctgc |
190 |
Q |
| |
|
||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
1997 |
gcacactgcctttactggatcaatatcccccgataatgtcaatttcttctctttcgagtctattgctactgattcaacccctgc |
1914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1173; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 462
Target Start/End: Complemental strand, 1699 - 1581
Alignment:
| Q |
344 |
ataaagttagattgcaatattaatagaccttatcaaattaatttaagttagacccatcttatgtcttcaaaaattaaaatcaatcaaaatggtatcgtaa |
443 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||| ||| ||| | ||| |||| || || ||||||||||||||||| |||||||||||| |
|
|
| T |
1699 |
ataaagttagattgtgttagaaatggaccttatcaaattaatgtaacttatagtcatattatatcatcgaaaattaaaatcaatcatgatggtatcgtaa |
1600 |
T |
|
| Q |
444 |
gtgaagatggtgaaagatt |
462 |
Q |
| |
|
||||||||| | ||||||| |
|
|
| T |
1599 |
gtgaagatgataaaagatt |
1581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1173; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 1874 - 1780
Alignment:
| Q |
226 |
ggtttgtctttttatttagacaaaaataaaataaaattagatttcattctcaaacaacggagttcaa-tactatttgaaatagttgtaaaataact |
320 |
Q |
| |
|
|||||||||||||||||| ||||| | |||| ||||||| ||| ||||| || ||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
1874 |
ggtttgtctttttatttacacaaaggtcaaattaaattagtttt-attcttgaatgacgaagttcaaatactatttgaaatagttataaaataact |
1780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 17854578 - 17854429
Alignment:
| Q |
41 |
ctctttcttctcctcttgtagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatactgcctttattggatcgatatcccccgat |
140 |
Q |
| |
|
||||||||||||||| | ||||| |||||| ||||||||||| ||| |||||||||||| || || | ||| | ||||| ||||| | |||||| | | |
|
|
| T |
17854578 |
ctctttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgtt |
17854479 |
T |
|
| Q |
141 |
aatgttaatttcttctctttcgagtctattgatattgattcaacccctgc |
190 |
Q |
| |
|
|| || ||||||||||| || | ||||||||||| ||||||||||||||| |
|
|
| T |
17854478 |
aacgtcaatttcttctcattagtgtctattgatactgattcaacccctgc |
17854429 |
T |
|
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