View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119A-Insertion-13 (Length: 129)

Name: NF3119A-Insertion-13
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119A-Insertion-13
NF3119A-Insertion-13
[»] chr6 (1 HSPs)
chr6 (40-129)||(6993764-6993853)
[»] chr1 (1 HSPs)
chr1 (33-74)||(7354187-7354228)
[»] chr4 (1 HSPs)
chr4 (33-69)||(31977456-31977492)
[»] chr3 (1 HSPs)
chr3 (33-88)||(42347353-42347408)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 6993764 - 6993853
Alignment:
Q  40 aataaaccttatcattaaatcaaatgagatatgatatgacatattaatcgataatgaaagaggcacttgtgcagtgcatgatacagatca 129  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  6993764 aataaaccttaccattaaatcaaatgagatatgatatgacatattaatcgataatgaaagaggtacttgtgcagtgcatattacagatca 6993853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 7354228 - 7354187
Alignment:
Q  33 ttggatcaataaaccttatcattaaatcaaatgagatatgat 74  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  7354228 ttggatcaataaatcttaccattaaatcaaatgagatatgat 7354187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 31977492 - 31977456
Alignment:
Q  33 ttggatcaataaaccttatcattaaatcaaatgagat 69  Q
    ||||||||||||| || ||||||||||||||||||||    
T  31977492 ttggatcaataaatctcatcattaaatcaaatgagat 31977456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 42347353 - 42347408
Alignment:
Q  33 ttggatcaataaaccttatcattaaatcaaatgagatatgatatgacatattaatc 88  Q
    ||||||||||||| || |||||||||| | ||||||||||||  ||| ||||||||    
T  42347353 ttggatcaataaatctcatcattaaattatatgagatatgatgcgacttattaatc 42347408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University