View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-14 (Length: 343)
Name: NF3119A-Insertion-14
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 25886377 - 25886042
Alignment:
| Q |
8 |
gtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25886377 |
gtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttc |
25886278 |
T |
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| Q |
108 |
ggttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttcctaacaccctttatcactaagaatctattg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25886277 |
ggttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattg |
25886178 |
T |
|
| Q |
208 |
gatagcaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
25886177 |
gatagcaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccagtgaggagaagttggaacttagtttgagaatagat |
25886078 |
T |
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| Q |
308 |
gacatattctcattggttaatcttccattatctttg |
343 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25886077 |
gacatattctcattggttaatcttccattatctttg |
25886042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 44350221 - 44349889
Alignment:
| Q |
8 |
gtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttc |
107 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44350221 |
gtaactaccattttggctataacttaaactgttctaggaatattggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttc |
44350122 |
T |
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| Q |
108 |
ggttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttcctaacaccctttatcactaagaatctattg |
207 |
Q |
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||||||||||||| ||||||||||| || || ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
44350121 |
ggttgtttcaagctgtagtcaacatagtaatagtgattctaatgttacacgaggaaaagttcaaatcttccaaacaccctttatccctaagaatctattg |
44350022 |
T |
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| Q |
208 |
gatagcaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagat |
307 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||| |
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| T |
44350021 |
gatagtaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaataccagtgaggaaaaaatggaacttagtttgagaatagat |
44349922 |
T |
|
| Q |
308 |
gacatattctcattggttaatcttccattatct |
340 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |
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| T |
44349921 |
gatatattctcattggttaatcttccattatct |
44349889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 14305304 - 14304972
Alignment:
| Q |
8 |
gtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttc |
107 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14305304 |
gtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcactttttc |
14305205 |
T |
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| Q |
108 |
ggttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttcctaacaccctttatcactaagaatctattg |
207 |
Q |
| |
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|||||||||||||| || |||||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14305204 |
ggttgtttcaagcaataaccaacatagttatagtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattg |
14305105 |
T |
|
| Q |
208 |
gatagcaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagat |
307 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||| ||| || | ||| | ||| || | ||| || || ||||| |||||||||||||||||| |
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| T |
14305104 |
gatagcaaactttgtgattgctactttgtttgctgtttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaatagat |
14305005 |
T |
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| Q |
308 |
gacatattctcattggttaatcttccattatct |
340 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
14305004 |
gacatattctcattggttaatcttccattatct |
14304972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 14321695 - 14321363
Alignment:
| Q |
8 |
gtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttc |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
14321695 |
gtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataaactttcttcatggaaacaaatagaagcactttttc |
14321596 |
T |
|
| Q |
108 |
ggttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttcctaacaccctttatcactaagaatctattg |
207 |
Q |
| |
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|||||||||||||| || |||||| ||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14321595 |
ggttgtttcaagcaataaccaacatagtgatagtgatactaatggtacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattg |
14321496 |
T |
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| Q |
208 |
gatagcaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagat |
307 |
Q |
| |
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||||||||||||||| ||||| ||||||||||| ||||||| || | ||| | ||| || | ||| || || ||||| |||||||||| ||||||| |
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| T |
14321495 |
gatagcaaactttgtaattgcaactttgtttgctgcttcagctattgttcgattgataactgtcggtgaagaaaagttggagcttagtttgaaaatagat |
14321396 |
T |
|
| Q |
308 |
gacatattctcattggttaatcttccattatct |
340 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |
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| T |
14321395 |
gatatattctcattggttaatcttccattatct |
14321363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 9 - 340
Target Start/End: Complemental strand, 14283545 - 14283214
Alignment:
| Q |
9 |
taactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcg |
108 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14283545 |
taactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcactttttcg |
14283446 |
T |
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| Q |
109 |
gttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttcctaacaccctttatcactaagaatctattgg |
208 |
Q |
| |
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||||||||||||| || |||||| || || |||||||||||| ||||||||| |||||| ||| ||||| |||||||||| |||| ||||| |||||| |
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| T |
14283445 |
gttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaatttattgg |
14283346 |
T |
|
| Q |
209 |
atagcaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatg |
308 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||| || | ||||| ||| | ||| || ||||| |||| |||||||||||||| |
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| T |
14283345 |
gcagcaaactttgtgattgcttctttgttcactgcttcagctattgttcgaatgataaccgttggtgaaacaaagttggagcttaatttgagaatagatg |
14283246 |
T |
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| Q |
309 |
acatattctcattggttaatcttccattatct |
340 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |
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| T |
14283245 |
acatattctctttggttaatcttccattatct |
14283214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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