View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-15 (Length: 307)
Name: NF3119A-Insertion-15
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-15 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 21272986 - 21273281
Alignment:
| Q |
11 |
agcgtcctccccacgagttaatcttcctccacactcagtccgtaatgaatttaaacatgtccttcttgttcctccctatcatggaaggaaagccaagata |
110 |
Q |
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| T |
21272986 |
agcgtcctccccacgagttaatcttcctccacactcagtccttaatgtatttaaacatgtccttcttgttcctccctatcatggaaggaaagccaagata |
21273085 |
T |
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| Q |
111 |
tttatcggttcctattgcaatgttgatttgtaaatatcttagttatacaatatttttagagtggacagaaatggataacttggacgcagttacttggtct |
210 |
Q |
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| T |
21273086 |
tttatcggttcctattgcaatgttgatttgtaaataccttcgttatacaatatttttagagtggacagaaatggataacttggacgcagttacttggtct |
21273185 |
T |
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| Q |
211 |
cctcatatggtagttattgacttggaattcaacgggaacttgactgcttgtgtgaattccttctcttcctctatttcttcttccagacccattctc |
306 |
Q |
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| T |
21273186 |
cctcatatggtagttattgacttggaattcaacgggaacttgactgcttgtgtgaattccttctcttcctctatttcttcttccagacccattctc |
21273281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 6751980 - 6752112
Alignment:
| Q |
11 |
agcgtcctccccacgagttaatcttcctccacactcagtccgtaatgaatttaaacatgtccttcttgttcctccctatcatggaaggaaagccaagata |
110 |
Q |
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||||||||||||| || || ||||||||||| ||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||| |
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| T |
6751980 |
agcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaaacatgtctttcttgctcctccctatcatggaaggaaggccgagata |
6752079 |
T |
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| Q |
111 |
tttatcggttcctattgcaatgttgatttgtaa |
143 |
Q |
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| T |
6752080 |
tttatcgatttcaattgcaatgttgacttgtaa |
6752112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 6956703 - 6956835
Alignment:
| Q |
11 |
agcgtcctccccacgagttaatcttcctccacactcagtccgtaatgaatttaaacatgtccttcttgttcctccctatcatggaaggaaagccaagata |
110 |
Q |
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|||||| |||||| || || ||||||||||| | || ||| ||||||||||||||| ||| |||||| |||||||| |||||||||||| | | ||||| |
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| T |
6956703 |
agcgtcatccccatgacttgatcttcctccatattcgatccttaatgaatttaaacaagtctttcttgctcctccctgtcatggaaggaaggtcgagata |
6956802 |
T |
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| Q |
111 |
tttatcggttcctattgcaatgttgatttgtaa |
143 |
Q |
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|||| ||||||| ||||||||||||| |||||| |
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| T |
6956803 |
tttaccggttccaattgcaatgttgacttgtaa |
6956835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 22010176 - 22010234
Alignment:
| Q |
85 |
cctatcatggaaggaaagccaagatatttatcggttcctattgcaatgttgatttgtaa |
143 |
Q |
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||||||| |||||||| |||||| |||||| |||||| ||||||||||||| |||||| |
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| T |
22010176 |
cctatcacggaaggaaggccaaggtatttaccggttcaaattgcaatgttgacttgtaa |
22010234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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