View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-16 (Length: 445)
Name: NF3119A-Insertion-16
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 36560287 - 36559850
Alignment:
| Q |
8 |
atttgttggctttgtgtgactcttgttgtatccgtgtagacacttttccacctttgaaataactacttattgccactcnnnnnnnattcaacacaaataa |
107 |
Q |
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| T |
36560287 |
atttgttggctttgtgtgactcttgttgtattcgtgtagacacttttccacctttgaaataactacttattgccactctttttttattcaacacaaataa |
36560188 |
T |
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| Q |
108 |
cctgcaaatraccagttttcnnnnnnngggctattctaattgataatattaagcaagaaagtataatctcttttacttgattgacattattctaatatat |
207 |
Q |
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| T |
36560187 |
cctgcaaataaccagttttcaaaaaaagggctattctaattgataatattaagcaagaaagtataatctcttttacttgattgacattattctaatatat |
36560088 |
T |
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| Q |
208 |
cttttttgtaatcttcataaagaaaatcaaagacacaaaatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaaatctttcacct |
307 |
Q |
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| T |
36560087 |
cttttttgtaatcttcataaagaaaatcaaagacacaaaatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaaatctttcacct |
36559988 |
T |
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| Q |
308 |
tgttttaaatgctctgtttagtttggttgtccaatgctctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatgttaaaatatag |
407 |
Q |
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| T |
36559987 |
tgttttaaatgctctgtttagtttggttgtccaatgctctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatgttaaaatatag |
36559888 |
T |
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| Q |
408 |
tagctggagaaaatgaggacatactgattgtcaccgta |
445 |
Q |
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| T |
36559887 |
tagctggagaaaatgaagacatactgattgtcaccgta |
36559850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 146 - 445
Target Start/End: Original strand, 36551996 - 36552295
Alignment:
| Q |
146 |
attgataatattaagcaagaaagtataatctcttttacttgattgacattattctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaa |
245 |
Q |
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| T |
36551996 |
attgataatattaagcaagaaagtataatctcttttacttgattgacattattctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaa |
36552095 |
T |
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| Q |
246 |
aatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaaatctttcaccttgttttaaatgctctgtttagtttggttgtccaatgct |
345 |
Q |
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| T |
36552096 |
aatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaaatctttcaccttgttttaaatgctctgtttagtttggttgtccaatgct |
36552195 |
T |
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| Q |
346 |
ctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatgttaaaatatagtagctggagaaaatgaggacatactgattgtcaccgta |
445 |
Q |
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| T |
36552196 |
ctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatgttaaaatatagtagctggagaaaatgaagacatactgattgtcaccgta |
36552295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 36548028 - 36548147
Alignment:
| Q |
8 |
atttgttggctttgtgtgactcttgttgtatccgtgtagacacttttccacctttgaaataactacttattgccactcnnnnnnnattcaacacaaataa |
107 |
Q |
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| T |
36548028 |
atttgttggctttgtgtgactcttgttgtattcgtgtagacacttttccacctttgaaataactacttattgccactctttttttattcaacacaaataa |
36548127 |
T |
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| Q |
108 |
cctgcaaatraccagttttc |
127 |
Q |
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| T |
36548128 |
cctgcaaataaccagttttc |
36548147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 10110171 - 10110136
Alignment:
| Q |
136 |
ggctattctaattgataatattaagcaagaaagtat |
171 |
Q |
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| T |
10110171 |
ggctattataattgataatattaagcaagaaagtat |
10110136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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