View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119A-Insertion-2 (Length: 626)

Name: NF3119A-Insertion-2
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119A-Insertion-2
NF3119A-Insertion-2
[»] chr1 (8 HSPs)
chr1 (97-626)||(15828595-15829113)
chr1 (8-96)||(15830429-15830517)
chr1 (8-96)||(15832157-15832245)
chr1 (8-96)||(15833884-15833972)
chr1 (12-100)||(15829340-15829428)
chr1 (493-541)||(15830305-15830353)
chr1 (493-541)||(15832033-15832081)
chr1 (493-541)||(15833760-15833808)
[»] scaffold0563 (13 HSPs)
scaffold0563 (8-99)||(1937-2027)
scaffold0563 (8-99)||(5534-5624)
scaffold0563 (8-99)||(8900-8990)
scaffold0563 (8-96)||(256-344)
scaffold0563 (8-96)||(9938-10026)
scaffold0563 (8-96)||(7073-7161)
scaffold0563 (10-96)||(3773-3859)
scaffold0563 (493-541)||(420-468)
scaffold0563 (493-541)||(1880-1928)
scaffold0563 (493-541)||(3649-3697)
scaffold0563 (493-541)||(7237-7285)
scaffold0563 (493-541)||(8999-9047)
scaffold0563 (493-541)||(10102-10150)
[»] scaffold0543 (2 HSPs)
scaffold0543 (8-99)||(391-481)
scaffold0543 (493-541)||(334-382)
[»] scaffold0492 (3 HSPs)
scaffold0492 (8-99)||(1937-2027)
scaffold0492 (8-96)||(298-386)
scaffold0492 (493-541)||(462-510)
[»] scaffold0754 (2 HSPs)
scaffold0754 (8-96)||(3405-3493)
scaffold0754 (493-541)||(3569-3617)
[»] chr5 (3 HSPs)
chr5 (493-592)||(37328448-37328546)
chr5 (500-595)||(37224735-37224826)
chr5 (221-270)||(13172919-13172968)
[»] scaffold1789 (1 HSPs)
scaffold1789 (221-270)||(1264-1313)
[»] chr8 (2 HSPs)
chr8 (221-270)||(22527731-22527780)
chr8 (221-270)||(25990352-25990401)
[»] chr6 (1 HSPs)
chr6 (221-270)||(33094790-33094839)
[»] chr3 (2 HSPs)
chr3 (221-270)||(20986876-20986925)
chr3 (229-265)||(28780865-28780901)


Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 97 - 626
Target Start/End: Complemental strand, 15829113 - 15828595
Alignment:
Q  97 acatgactcaagtgtctcattagcttgtgctatatgagaacttagatagacttttacatagagagttcctaagctatgagccaggttgagttagtactta 196  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15829113 acatgactcaagtggctcattagcttgtgctatatgagaacttagatagagttttacatagagagttcctaagctatgagccaggttgagttagtactta 15829014  T
Q  197 actcttcacttgagaaccttgccaaaaacaaacttttattgcttctaataaaatggcttttgaaacctctcaaagtagcttgcaacaagctaattggttt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15829013 actcttcacttgagaaccttgccaaaaacaaacttttattgcttcgactaaaatggcttttgaaacctctcaaagtagcttgcaacaaactaattggttt 15828914  T
Q  297 gttaagaacataattaaaatttacctgatgaagagtacaaatgttactggaaacttatccagaaaatgaaacataacataggcatgtttagaacacgatt 396  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||    
T  15828913 gttaagaacataattgaaatttacctgatgaaaagtacaaatgttactggaaacttatccaaaaaatgaaacataacaaaggcatgtttaaaacacaatt 15828814  T
Q  397 caaacatatacatggagtatggctcaaattgaaatgaaactcaaatgtgaaacataatatagttgtattctgcaatggttgtaaaccttattattagata 496  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||           
T  15828813 caaacatatacatgaagtatggcttaaattgaaatgaaactcaaatgtgaaacataatatagttgtattctgaaatggttgtaaaccttatta------- 15828721  T
Q  497 atggtttattgaaatttgcatacatgatttgtttctaattacaaagtaagtgtggaaccaaataacattaatggtctagaacaatgttggctagcagcaa 596  Q
        |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15828720 ----tttattgaaatttgcatacatgatttgtttttaattacaaagaaagtgtggaaccaaataacattaatggtctagaacaatgttggctagcagcaa 15828625  T
Q  597 attttggatcagttacttcacttgtcaaag 626  Q
    ||||||||||||||||||||||||||||||    
T  15828624 attttggatcagttacttcacttgtcaaag 15828595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 15830517 - 15830429
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaat 96  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  15830517 ggaagtgggacatatagcgaagcattgaggcattctctatttatgaagcgtgactcaaattgtaatgaaattatattgtgaatctgaat 15830429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 15832245 - 15832157
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaat 96  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  15832245 ggaagtgggacatatagcgaagcattgaggcattctctatttatgaagcgtgactcaaattgtaatgaaattatattgtgaatctgaat 15832157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 15833972 - 15833884
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaat 96  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  15833972 ggaagtgggacatatagcgaagcattgaggcattctctatttatgaagcgtgactcaaattgtaatgaaattatattgtgaatctgaat 15833884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 15829428 - 15829340
Alignment:
Q  12 gtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaatacat 100  Q
    ||||||||||||  |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15829428 gtaggacatatatcgaagcattgaggcattctatatatatggagcgttactcaaattgaaatgaaattatattgtgaatctgaatacat 15829340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 15830353 - 15830305
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  15830353 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 15830305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 15832081 - 15832033
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  15832081 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 15832033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 15833808 - 15833760
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  15833808 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 15833760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563 (Bit Score: 80; Significance: 3e-37; HSPs: 13)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 2027 - 1937
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaataca 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2027 ggaagtaggac-tatagagaagcattgaggcattctctatttatgaagcgtgactcaaattgaaatgaaattatattgtgaatctgaataca 1937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 5624 - 5534
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaataca 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5624 ggaagtaggac-tatagagaagcattgaggcattctctatttatgaagcgtgactcaaattgaaatgaaattatattgtgaatctgaataca 5534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 8900 - 8990
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaataca 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8900 ggaagtaggac-tatagagaagcattgaggcattctctatttatgaagcgtgactcaaattgaaatgaaattatattgtgaatctgaataca 8990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 256 - 344
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaat 96  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  256 ggaagtgggacatatagcgaagcattgaggcattctctatttatgaagcgtgactcaaattgtaatgaaattatattgtgaatctgaat 344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 9938 - 10026
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaat 96  Q
    |||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  9938 ggaagtgggacatatagcgaagcattgaggtattctctatttatgaagcgtgactcaaattgtaatgaaattatattgtgaatctgaat 10026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 7073 - 7161
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaat 96  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| |||||  ||||||||| ||||||||||||||||||||||||||    
T  7073 ggaagtaggacatatagcgaagcattgaggcattctctattaatggagcgtggctcaaattgtaatgaaattatattgtgaatctgaat 7161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 3859 - 3773
Alignment:
Q  10 aagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaat 96  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||||  ||||||||| ||||||||||||||||||||||||||    
T  3859 aagtaggacatatagcgaagcattgaggcattctctattaatggagcgtggctcaaattgtaatgaaattatattgtgaatctgaat 3773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Original strand, 420 - 468
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  420 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 1928 - 1880
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  1928 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 1880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 3697 - 3649
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  3697 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 3649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Original strand, 7237 - 7285
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  7237 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 7285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Original strand, 8999 - 9047
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  8999 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 9047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Original strand, 10102 - 10150
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  10102 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 10150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 481 - 391
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaataca 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  481 ggaagtaggac-tatagagaagcattgaggcattctctatttatgaagcgtgactcaaattgaaatgaaattatattgtgaatctgaataca 391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 382 - 334
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  382 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 2027 - 1937
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaataca 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2027 ggaagtaggac-tatagagaagcattgaggcattctctatttatgaagcgtgactcaaattgaaatgaaattatattgtgaatctgaataca 1937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 298 - 386
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaat 96  Q
    |||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  298 ggaagtgggacatatagcgaagcattgaggtattctctatttatgaagcgtgactcaaattgtaatgaaattatattgtgaatctgaat 386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Original strand, 462 - 510
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  462 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0754 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 3405 - 3493
Alignment:
Q  8 ggaagtaggacatatagagaagcattgaggcattctctatttatgaagcgttactcaaattgaaatgaaattatattgtgaatctgaat 96  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  3405 ggaagtgggacatatagcgaagcattgaggcattctctatttatgaagcgtgactcaaattgtaatgaaattatattgtgaatctgaat 3493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0754; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Original strand, 3569 - 3617
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaa 541  Q
    |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  3569 gataatggttaattgaaatttgcttagaagatttgtttgtaattacaaa 3617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 493 - 592
Target Start/End: Complemental strand, 37328546 - 37328448
Alignment:
Q  493 gataatggtttattgaaatttgcatacatgatttgtttctaattacaaagtaagtgtggaaccaaataacattaatggtctagaacaatgttggctagca 592  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||  ||| | ||||||| | ||| ||| |||||||    
T  37328546 gataatggtttgttgaaatttgcatacatgattt-tttttaattacaaagaaagtttggaaccaaattgcatgattggtctataccaaggttagctagca 37328448  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 595
Target Start/End: Original strand, 37224735 - 37224826
Alignment:
Q  500 gtttattgaaatttgcatacatgatttgtttctaattacaaagtaagtgtggaaccaaataacattaatggtctagaacaatgttggctagcagca 595  Q
    |||||||||  |||| | ||||||||||||| ||||||||    ||||||||||||||||||||| | || |||| | ||||||| ||||| ||||    
T  37224735 gtttattgatgtttggaaacatgatttgtttttaattaca----aagtgtggaaccaaataacatgactgatctataccaatgttagctaggagca 37224826  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 13172919 - 13172968
Alignment:
Q  221 aaaacaaacttttattgcttctaataaaatggcttttgaaacctctcaaa 270  Q
    ||||||| ||||| |||||||||  |||||||||||| ||||||||||||    
T  13172919 aaaacaagcttttcttgcttctacaaaaatggctttttaaacctctcaaa 13172968  T

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Target: scaffold1789 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1789
Description:

Target: scaffold1789; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 1313 - 1264
Alignment:
Q  221 aaaacaaacttttattgcttctaataaaatggcttttgaaacctctcaaa 270  Q
    ||||||| ||||| |||||||||  |||||||||||| ||||||||||||    
T  1313 aaaacaagcttttcttgcttctacaaaaatggctttttaaacctctcaaa 1264  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 22527731 - 22527780
Alignment:
Q  221 aaaacaaacttttattgcttctaataaaatggcttttgaaacctctcaaa 270  Q
    ||||||| ||||| |||||||||  |||||||||||| ||||||||||||    
T  22527731 aaaacaagcttttcttgcttctacaaaaatggctttttaaacctctcaaa 22527780  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 25990352 - 25990401
Alignment:
Q  221 aaaacaaacttttattgcttctaataaaatggcttttgaaacctctcaaa 270  Q
    ||||||| ||||| |||||||||  |||||||||||| ||||||||||||    
T  25990352 aaaacaagcttttcttgcttctacaaaaatggctttttaaacctctcaaa 25990401  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 33094839 - 33094790
Alignment:
Q  221 aaaacaaacttttattgcttctaataaaatggcttttgaaacctctcaaa 270  Q
    ||||||| ||||| |||||||||  |||||||||||| ||||||||||||    
T  33094839 aaaacaagcttttcttgcttctacaaaaatggctttttaaacctctcaaa 33094790  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 20986925 - 20986876
Alignment:
Q  221 aaaacaaacttttattgcttctaataaaatggcttttgaaacctctcaaa 270  Q
    ||||||| ||||| |||||||||  |||||||||||| ||||||||||||    
T  20986925 aaaacaagcttttcttgcttctacaaaaatggctttttaaacctctcaaa 20986876  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 28780865 - 28780901
Alignment:
Q  229 cttttattgcttctaataaaatggcttttgaaacctc 265  Q
    |||||||| |||||| |||||||||||||||||||||    
T  28780865 cttttatttcttctactaaaatggcttttgaaacctc 28780901  T

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