View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-22 (Length: 789)
Name: NF3119A-Insertion-22
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 698; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 8 - 789
Target Start/End: Complemental strand, 35809216 - 35808434
Alignment:
| Q |
8 |
tagggttcattgaatgtgtgaactttgtctaaccttgataaaccgtcaatatccaattggccaaaacnnnnnnnngtaaacnnnnnnn-tttagtaaaaa |
106 |
Q |
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| T |
35809216 |
tagggtttattgaatctgtaaactttgtctaaccttgataaaccgtcaatatccaattggccaaaacttttttt-gtaaacaaaaaaagtttagtaaaaa |
35809118 |
T |
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| Q |
107 |
gacagcattggcccatgcaattcccaaaccaggacttcacatgatctaataggccaagaaatgtgattgcctttaaatagcaacaattcactaaaatata |
206 |
Q |
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| T |
35809117 |
gacagcattggcccatgcaattcccaaaccaggacttcacatgatctaataggccaagaaatgtgattgcctttaaatagcaacaattcactaaaatata |
35809018 |
T |
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| Q |
207 |
ccaatagtgagaaccatacatttatcatcactaaaactaaagatagagagcactctagagaaatcatgaagggttatgaaccaaggtcaagttcctcttg |
306 |
Q |
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| T |
35809017 |
ccaatagtgagaaccatacatttatcatcactaaaactaaagatagagagcactctagagaaatcatgaagggttatgaaccaaggtcaagttcctcttg |
35808918 |
T |
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| Q |
307 |
tgcagcctgcaaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccgatgagtgcaagaaattcgcgaaagttcacaaa |
406 |
Q |
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| T |
35808917 |
tgcagcctgcaaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccgatgagtgcaagaaattcgcgaaagttcacaaa |
35808818 |
T |
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| Q |
407 |
gtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgtgaattctttggcttatgaagctgatgcaaggc |
506 |
Q |
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| T |
35808817 |
gtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgtgaattctttggcttatgaagctgatgcaaggc |
35808718 |
T |
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| Q |
507 |
ttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttcaacatgaccttgccattgcaaaggatcgtctggc |
606 |
Q |
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| T |
35808717 |
ttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttcaacatgatcttgccattgcaaaggatcgcctggc |
35808618 |
T |
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| Q |
607 |
tcgttgcgctgcggctgctgctactcctacttcttctttttccaatgatatgatgaattcaaatgttagtttgccaccttttcctgagtttttcacttgc |
706 |
Q |
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| T |
35808617 |
tcgttgcgctgcggctgctgctactcctacttcttctttttccaatgatatgatgaattcaaatgttagtttgccaccttttcctgagtttttcacttgc |
35808518 |
T |
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| Q |
707 |
agtgacttcagtgataatttaagtcacagttcttcgtctcaatcgtttactcg-aatgaaactgtcgatgatttcgttcaaatt |
789 |
Q |
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| T |
35808517 |
agtgacttcagtgataatttaagtcacagttcttcgtctcaatcgtttactcgaaatgaaactgtcgatgatttcgttcaaatt |
35808434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 275 - 612
Target Start/End: Complemental strand, 32036582 - 32036245
Alignment:
| Q |
275 |
aagggttatgaaccaaggtcaagttcctcttgtgcagcctgcaaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccg |
374 |
Q |
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| T |
32036582 |
aagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttacttccattcta |
32036483 |
T |
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| Q |
375 |
atgagtgcaagaaattcgcgaaagttcacaaagtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgt |
474 |
Q |
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| T |
32036482 |
atgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagt |
32036383 |
T |
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| Q |
475 |
gaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttcaa |
574 |
Q |
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||||||| | |||||||||||||| ||||||||||||||||| || || |||||||| ||| | ||||| | ||||||||||||||| | |||||||| |
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| T |
32036382 |
gaattctcttgcttatgaagctgaagcaaggcttagagacccagtttacggatgcattggttccatagctatgttgcaaaggaagatgatggaacttcag |
32036283 |
T |
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| Q |
575 |
catgaccttgccattgcaaaggatcgtctggctcgttg |
612 |
Q |
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| T |
32036282 |
catgatttggccattgctaaggaacgtcttgctcgttg |
32036245 |
T |
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