View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-23 (Length: 723)
Name: NF3119A-Insertion-23
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-23 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 286 - 585
Target Start/End: Original strand, 45746930 - 45747230
Alignment:
| Q |
286 |
ttagtttaataacagagaaataaaatggcaagaaattgnnnnnnnn-catacgattcaagctcttgaatttgattaggagtgtgtctgtggtatctcttc |
384 |
Q |
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|||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45746930 |
ttagtttaataaaaaagaaataaaatggcaagaaattgaaaaaaaaacatacgattcaagctcttgaatttgattaggagtgtgtctgtggtatctcttc |
45747029 |
T |
|
| Q |
385 |
ttcctcttgcgctgaccatcatcaccaccatcctgatcatcaccagataatccttcaagatcaaagttatcgcttccggaccggctttcatactcatctt |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45747030 |
ttcctcttgcgctgaccatcatcaccaccatcctgatcatcaccagataatccttcaagatcaaagttatcgcttccggaccggctttcatactcatctt |
45747129 |
T |
|
| Q |
485 |
ctctcattctcccaagcagaccagtatctaaactatcaccagtgagaccaatctcactctgcccctccatttttctttgctgtagaaaacaatctcatca |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45747130 |
ctctcattctcccaagcagaccagtatctaaactatcaccagtgagaccaatctcactctgcccctccatttttctttgctgtagaaaacaatctcatca |
45747229 |
T |
|
| Q |
585 |
g |
585 |
Q |
| |
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| |
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|
| T |
45747230 |
g |
45747230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 45746657 - 45746877
Alignment:
| Q |
8 |
taggcaaccttgttgtggagacattaaaaaccttaatgccacaactcagatcgcgagtgcagatttttaaaagaaaatggaacatgatatttaacattca |
107 |
Q |
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| T |
45746657 |
taggcaaccttgttgtggagacattaaaaaccttaatgccgcaactcagatcgcgactgcagatttttaaaagaaaatggaacatgatatttaacattca |
45746756 |
T |
|
| Q |
108 |
ccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45746757 |
ccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggatg |
45746856 |
T |
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| Q |
208 |
aggacactccttgaagaaact |
228 |
Q |
| |
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||||||||||||||||||||| |
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| T |
45746857 |
aggacactccttgaagaaact |
45746877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 677 - 723
Target Start/End: Original strand, 45747320 - 45747366
Alignment:
| Q |
677 |
gatataagattgagcatacagttgagaagaaagtagatggattttgc |
723 |
Q |
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| T |
45747320 |
gatataagattaagcatacagttgagaagaaagtagatggattttgc |
45747366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 444 - 549
Target Start/End: Original strand, 6613722 - 6613827
Alignment:
| Q |
444 |
atcaaagttatcgcttccggaccggctttcatactcatcttctctcattctcccaagcagaccagtatctaaactatcaccagtgagaccaatctcactc |
543 |
Q |
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|||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6613722 |
atcaaagttatcgcttccggaccgactttcatacttatcctctctcattctcccaagcagaccagtatctaaactatcactagtgagaccaatctcactc |
6613821 |
T |
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| Q |
544 |
tgcccc |
549 |
Q |
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|||||| |
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| T |
6613822 |
tgcccc |
6613827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 9960 - 10081
Alignment:
| Q |
107 |
accttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggat |
206 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||| || ||||| || |||||||||| |
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| T |
9960 |
accttcatctgagttcgccgattctgaaaccagaacttgacttgtttgtttgccaagccaagcttcttgctaaggtcagttctttgcttctcatcaggat |
10059 |
T |
|
| Q |
207 |
gaggacactccttgaagaaact |
228 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
10060 |
gtggacactccttgaagaaact |
10081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 12327055 - 12327178
Alignment:
| Q |
105 |
tcaccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcagg |
204 |
Q |
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||||||||||||| |||| ||||| || ||||| || || |||||| | ||||||| | ||| || |||||||| ||||| |||||||| ||||| || |
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| T |
12327055 |
tcaccttcatttgtgttcttcgattttggaaccaaaacttaacttgtcttgtttccaaacaaagccttttgctaagttccaatctttgtttctcatctgg |
12327154 |
T |
|
| Q |
205 |
atgaggacactccttgaagaaact |
228 |
Q |
| |
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|||||||||||||| || ||||| |
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| T |
12327155 |
gtgaggacactccttaaacaaact |
12327178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 12327260 - 12327310
Alignment:
| Q |
339 |
ttcaagctcttgaatttgattaggagtgtgtctgtggtatctcttcttcct |
389 |
Q |
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||||||||||||||| || | ||||||||||| ||| |||||||||||||| |
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| T |
12327260 |
ttcaagctcttgaatctgttgaggagtgtgtcggtgatatctcttcttcct |
12327310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 28597652 - 28597614
Alignment:
| Q |
184 |
caacctttgtttttcatcaggatgaggacactccttgaa |
222 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
28597652 |
caacctttgtttctcatcaggatgaggacactccttgaa |
28597614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 28599320 - 28599429
Alignment:
| Q |
107 |
accttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggat |
206 |
Q |
| |
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||||||||||| |||| | ||| || ||||| || ||||||||| | ||||||| | ||| || |||||||| || | ||||||||||||||||||| |
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| T |
28599320 |
accttcatttgtgttcttctattttggaaccaaaacttgacttgtcttgtttccaaacaaagccttttgctaagttcaagtctttgtttttcatcaggat |
28599419 |
T |
|
| Q |
207 |
gaggacactc |
216 |
Q |
| |
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|||||||||| |
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|
| T |
28599420 |
gaggacactc |
28599429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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