View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-24 (Length: 824)
Name: NF3119A-Insertion-24
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-24 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 226 - 824
Target Start/End: Complemental strand, 40834799 - 40834204
Alignment:
| Q |
226 |
cggttaaatttaagtttttacttcacattggcccttcagcttatttttgcaataattttaatataaaaacagacacttggtttaatgnnnnnnnntatca |
325 |
Q |
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| T |
40834799 |
cggttaaatttaagtttttacttcacattggcccttcagcctatttttgcaataattttaatataaaaacagacacttggtttaatgaaaa----tatca |
40834704 |
T |
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| Q |
326 |
ttggaactgttaccttaatggtaaaatctgcagagtagcacacatgttatgttaatcaacannnnnnnctgtagcacatcccgtgagttatgtacgtgta |
425 |
Q |
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| T |
40834703 |
atagaactgttaccttaatggtaaaatctgcagagtagcacacatgttatgttaatcaacatttttttctgtagcacatcccgtgagttacgtacgtgta |
40834604 |
T |
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| Q |
426 |
tgtatgacaattgacaataggatgagcatctgaatgaatccatttgggttggaaaactaaraaaggaaacatctctcagcatcaaattcaacggataaga |
525 |
Q |
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| T |
40834603 |
tgtatgacaattgacaataggatgagcatctgaatgaatccatttgggttggaaaactaagaaaggaaacatctctcagcatcaaattcaacggataaga |
40834504 |
T |
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| Q |
526 |
tcatattcatataacagtatcattattattattatgatcatatgtgtttaaccttacacttgttattaatgattccttttcctatataaacccactaact |
625 |
Q |
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| T |
40834503 |
tcatattcatataacagtatcattatta---ttatgatcatatgtgtttaaccttacacttgttattaatgattccttttcctatataaacccactaact |
40834407 |
T |
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| Q |
626 |
actactctactactatcatcattatccattaccatttctcaagaaactaataaatagcattcttttcactaattttgttctctcaacaaaaagaa--gag |
723 |
Q |
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| T |
40834406 |
actactctactactatcatcataatccattaccatttctcaagaaactaataaatagcattc-tttcaccaattttgttctctcaacaaaaagaaaggag |
40834308 |
T |
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| Q |
724 |
aggnnnnnnntagtattcaacatcatgcaggttgcacatcttttgtttggcat-tttggtaggttaa-taattta-tatcatttttactcttacttttac |
820 |
Q |
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| T |
40834307 |
aggaaaaaaatagtattcaacatcatgcatgttgcacatcttttgtttggcatatttggtaggttaattaatttattatcatttttactcttacttttac |
40834208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 40835086 - 40834887
Alignment:
| Q |
7 |
aggacattcagatgtaaatgtaaaattgtaaatgtaaatatccccaaaggtaaacatttatgaaccatagacccaaacatagataccagacacgacacgg |
106 |
Q |
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| T |
40835086 |
aggacattcaaatgtaaatgtaaaattgtaaatgtaaataaccccaaaggtaaacatttatgaaccatagacccaaacatagataccggatacgacacgg |
40834987 |
T |
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| Q |
107 |
acaaacacaacaacatcgataataatttaagaaactgacatgattcaatttgataatattatcgcgattttgagttaatcacacacaatatgtatccgat |
206 |
Q |
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| T |
40834986 |
acaaacacaacaacatcgataataatttaagaaactgacatgattcaatttgataatattatcacggtattgtgttaatcacatacaatatgtatccgat |
40834887 |
T |
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