View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-25 (Length: 683)
Name: NF3119A-Insertion-25
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-25 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 161 - 680
Target Start/End: Complemental strand, 8060449 - 8059924
Alignment:
| Q |
161 |
tttgtatatttcaaggaagaatgactaaattgtgtaaaacttacaagtgtgacattagataggtttcaaattaaccttgatccctacttgtactaatatt |
260 |
Q |
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| T |
8060449 |
tttgtatatttccaggaagaatgactaaattgtgtaaaacttacaagtgtgacattagataggtttcaaattaaccttgatccctacttctactaatatt |
8060350 |
T |
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| Q |
261 |
-gatcattttgga-atgtcttagatattgaaactatatatatactactcaaccagtcaaaaattggacaatttaaattgtggtcacatacttgcaaatta |
358 |
Q |
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| T |
8060349 |
tgatcattttggtcatgtcttagatattgaaactatatatatactactcaaccagtaaaaaattggacaatttaaattgtggtcacatacttgcaaatta |
8060250 |
T |
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| Q |
359 |
tttcacgatcttttgatattatgaaaaattataattaaatacgactattcatattaatgcaaatatagttgcaacccattgaagacctctttaaaaattt |
458 |
Q |
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| T |
8060249 |
tttcacgatcttttgatattatgaaaaattataattaaatacgactaatcatattaatgcaaatatagttgcaacccattgaagacctctttaaaaattt |
8060150 |
T |
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| Q |
459 |
tgattttgcgaatttatgtagagtacgaagac---nnnnnnnnnnnnnnnnntcaatagagagaataagaatacaggagagtgtgacacgtatgctccta |
555 |
Q |
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| T |
8060149 |
tgattttgcgaatttatgtagagtacaaagacaaaaaaaatatataaaaaaatcaatagagagaataagaatacaagagagtgtgacacgtatgctccta |
8060050 |
T |
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| Q |
556 |
tacaatgagagtgtgccacataacaaataaaaattgagttttcttattagtatagattcgtgaaatccgatgatccaaattggacctagatccgcggtct |
655 |
Q |
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| T |
8060049 |
tacaatgagagtgtgccacataactaataaaaattgaattttcttattagtatagattcgcgaaatccgatgatccaaattggacctagatccgcggtct |
8059950 |
T |
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| Q |
656 |
gagtaaagatc-gatagctgttgacc |
680 |
Q |
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| T |
8059949 |
gagtaaggatcggatagctgttgacc |
8059924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 8060552 - 8060449
Alignment:
| Q |
8 |
taagtgtaagttggaccatatatccttgaaaagggtatatgtctaactttatggttgggtagccctacaacaaattgcagatactaccttccttttattc |
107 |
Q |
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| T |
8060552 |
taagtgtaagttggaccatatatccttgaaaaggggat--gtctaactttatggttgggtggccctacaacaaattacagatactaccttccttttattc |
8060455 |
T |
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| Q |
108 |
tttaat |
113 |
Q |
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| T |
8060454 |
tttaat |
8060449 |
T |
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