View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119A-Insertion-26 (Length: 505)

Name: NF3119A-Insertion-26
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119A-Insertion-26
NF3119A-Insertion-26
[»] chr7 (5 HSPs)
chr7 (8-408)||(5103679-5104074)
chr7 (18-183)||(5110476-5110641)
chr7 (418-503)||(5103519-5103604)
chr7 (289-400)||(29229675-29229786)
chr7 (350-398)||(34427570-34427618)
[»] chr2 (2 HSPs)
chr2 (292-405)||(30429090-30429202)
chr2 (288-352)||(9733541-9733605)
[»] chr5 (2 HSPs)
chr5 (292-398)||(16829208-16829313)
chr5 (282-337)||(39063063-39063118)
[»] chr4 (3 HSPs)
chr4 (293-405)||(7277438-7277550)
chr4 (340-400)||(21861077-21861137)
chr4 (340-400)||(21916940-21917000)
[»] chr6 (1 HSPs)
chr6 (278-356)||(674121-674199)
[»] chr1 (2 HSPs)
chr1 (288-405)||(8174117-8174234)
chr1 (332-405)||(47154695-47154768)
[»] chr3 (2 HSPs)
chr3 (340-412)||(11534809-11534881)
chr3 (292-358)||(26331223-26331289)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 5104074 - 5103679
Alignment:
Q  8 ccccccacaacttgtatagagtttgcagcttccatttgggtctgtagaactttccctaactttttcattggcaggcatggcatgaaattctttgaaaatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5104074 ccccccacaacttgtatagagtttgcagcttccatttgggtctttagaactttccctaactttttcattggcaagcatggcatgaaattctttgaaaatc 5103975  T
Q  108 tttaatgtatcatccattaattccttagcaactccatggttcacaacctaccatcaaattaagaacatatacaacaagattaacctttgcatgatcattc 207  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5103974 ttatatgtatcatccattaattccttagcaactccatggttcacaacctaccatcaaattaagaacatatacaacaagattaacgtttgcatgatcattc 5103875  T
Q  208 tatcaaattatggtcaactcatttatgtatcctcgaccagcagtcaaatattaatgcctcacgatacacatatatattttctccggtcacgtttataaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| ||||| |||| |||||||||    
T  5103874 tatcaaattatggtcaactcatttatgtatcctcgaccagcagtcaaatattaatccctcacgatacacat--atatttcctccgatcacatttataaga 5103777  T
Q  308 caaaaacaattttttatgttcgtcgaataaccaatgtatctggtctatataaaggtcagagaaattacttattgaatgaacctaaaaaattgtgttttct 407  Q
    ||||||||| |||   ||||| |||||||| |||||||||||||||||||||| || ||||| |||| |||||||||||||| ||||| || | ||||||    
T  5103776 caaaaacaacttt---tgttcatcgaataatcaatgtatctggtctatataaatgttagagacattagttattgaatgaaccaaaaaagttattttttct 5103680  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 5110641 - 5110476
Alignment:
Q  18 cttgtatagagtttgcagcttccatttgggtctgtagaactttccctaactttttcattggcaggcatggcatgaaattctttgaaaatctttaatgtat 117  Q
    |||||||||||||| |||||||||||||| ||| | ||||||||  | |  ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  5110641 cttgtatagagtttacagcttccatttggatcttttgaactttcaattaacttttcattggcaggcatggcatgaaattctttgaaaattcttaatgtat 5110542  T
Q  118 catccattaattccttagcaactccatggttcacaacctaccatcaaattaagaacatatacaaca 183  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| | |||||| ||| ||| ||||    
T  5110541 catccattaattccttagcaactccatgattcacaacctagcattacattaagcacaaatataaca 5110476  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 418 - 503
Target Start/End: Complemental strand, 5103604 - 5103519
Alignment:
Q  418 tccataaatttgccgtctctaacatttaattaacgatggaattagaaactaattttgtttttctctctctattattccgtcttcat 503  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5103604 tccataaatttgccgtctctaacatttaattaacgaaggaattagaaactaattttgtttttctctctctattattccgtcttcat 5103519  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 29229675 - 29229786
Alignment:
Q  289 tccggtcacgtttataagacaaaaacaattttttatgttcgtcgaataaccaatgtatctggtctatataaaggtcagagaaattacttattgaatgaac 388  Q
    ||||||||| | ||||||  |||||||| ||||||  ||| |  || ||| |||| || ||||||||||| |||||||| | |||| ||||| |||||||    
T  29229675 tccggtcacatatataagcaaaaaacaactttttagattcattaaacaactaatgcatttggtctatatataggtcagatacattagttattcaatgaac 29229774  T
Q  389 ctaaaaaattgt 400  Q
    ||||||| ||||    
T  29229775 ctaaaaagttgt 29229786  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 34427570 - 34427618
Alignment:
Q  350 gtctatataaaggtcagagaaattacttattgaatgaacctaaaaaatt 398  Q
    ||||||||| |||||||| | |||| ||||||||||||| |||||||||    
T  34427570 gtctatatataggtcagatatattagttattgaatgaacttaaaaaatt 34427618  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 405
Target Start/End: Complemental strand, 30429202 - 30429090
Alignment:
Q  292 ggtcacgtttataagacaaaaacaattttttatgttcgtcgaataaccaatgtatctggtctatataaaggtcagagaaattacttattgaatgaaccta 391  Q
    |||||| |||||||| |||||| |||| |||| |||  | ||||||| ||||||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  30429202 ggtcacatttataag-caaaaaaaattgtttaggtttattgaataactaatgtatctagtctatataaaggtcagatacattaattattgaatgaaccta 30429104  T
Q  392 aaaaattgtgtttt 405  Q
    |||| |||| ||||    
T  30429103 aaaagttgtttttt 30429090  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 9733605 - 9733541
Alignment:
Q  288 ctccggtcacgtttataagacaaaaacaattttttatgttcgtcgaataaccaatgtatctggtc 352  Q
    |||||||||| |||||||   ||||||||||||||| |||| | ||||||| |||||||| ||||    
T  9733605 ctccggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatccggtc 9733541  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 292 - 398
Target Start/End: Original strand, 16829208 - 16829313
Alignment:
Q  292 ggtcacgtttataagacaaaaacaattttttatgttcgtcgaataaccaatgtatctggtctatataaaggtcagagaaattacttattgaatgaaccta 391  Q
    |||||| |||||||| |||||| || |||||| |||| | ||||| | ||||||||| || ||||||||||||||| | |||| |||||  |||||||||    
T  16829208 ggtcacatttataag-caaaaataactttttaagttcattgaatatctaatgtatctagtttatataaaggtcagatacattagttattcgatgaaccta 16829306  T
Q  392 aaaaatt 398  Q
    |||||||    
T  16829307 aaaaatt 16829313  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 337
Target Start/End: Original strand, 39063063 - 39063118
Alignment:
Q  282 tattttctccggtcacgtttataagacaaaaacaattttttatgttcgtcgaataa 337  Q
    |||||||| ||||||| ||||||||  ||||||||||||||| |||||| ||||||    
T  39063063 tattttcttcggtcacatttataagtaaaaaacaattttttaagttcgttgaataa 39063118  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 405
Target Start/End: Complemental strand, 7277550 - 7277438
Alignment:
Q  293 gtcacgtttataagacaaaaacaattttttatgttcgtcgaataaccaatgtatctggtctatataaaggtcagagaaattacttattgaatgaacctaa 392  Q
    ||||| ||||||||  |||||| | |||||| |||  | |||||||  ||||||||| |||||||||| |||||| | |||| ||||| |||||||||||    
T  7277550 gtcacatttataagcgaaaaacgactttttaagtttattgaataactcatgtatctgatctatataaaagtcagatacattagttattcaatgaacctaa 7277451  T
Q  393 aaaattgtgtttt 405  Q
    ||| |||| ||||    
T  7277450 aaagttgtttttt 7277438  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 21861137 - 21861077
Alignment:
Q  340 aatgtatctggtctatataaaggtcagagaaattacttattgaatgaacctaaaaaattgt 400  Q
    ||||||||||||||||||||| |||||| | |||| ||||| |||| | ||||||||||||    
T  21861137 aatgtatctggtctatataaaagtcagatacattaattattcaatgtatctaaaaaattgt 21861077  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 21917000 - 21916940
Alignment:
Q  340 aatgtatctggtctatataaaggtcagagaaattacttattgaatgaacctaaaaaattgt 400  Q
    ||||||||||||||||||||| |||||| | |||| ||||| |||| | ||||||||||||    
T  21917000 aatgtatctggtctatataaaagtcagatacattaattattcaatgtatctaaaaaattgt 21916940  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 674199 - 674121
Alignment:
Q  278 tatatattttctccggtcacgtttataagacaaaaacaattttttatgttcgtcgaataaccaatgtatctggtctata 356  Q
    |||||| ||||||||||||| ||||||||  |||||||||||||||  ||| | ||||||| ||| ||| |||||||||    
T  674199 tatatactttctccggtcacatttataagcaaaaaacaattttttagattcattgaataactaatatatttggtctata 674121  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 405
Target Start/End: Complemental strand, 8174234 - 8174117
Alignment:
Q  288 ctccggtcacgtttataagacaaaaacaattttttatgttcgtcgaataaccaatgtatctggtctatataaaggtcagagaaattacttattgaatgaa 387  Q
    |||||||||| ||||||||  ||| |||| ||||||| ||| | |||| |  |||||||||||||||||||||  || || | | ||  |||| ||||||    
T  8174234 ctccggtcacatttataagcaaaacacaactttttatattcattgaatgattaatgtatctggtctatataaaaatcggatacaatagatattcaatgaa 8174135  T
Q  388 cctaaaaaattgtgtttt 405  Q
    ||||||||||||| ||||    
T  8174134 cctaaaaaattgtttttt 8174117  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 47154695 - 47154768
Alignment:
Q  332 gaataaccaatgtatctggtctatataaaggtcagagaaattacttattgaatgaacctaaaaaattgtgtttt 405  Q
    ||||||||| ||||||  ||||||||| ||| |||| | |||| ||||| |||||||||||||| |||| ||||    
T  47154695 gaataaccactgtatccagtctatatataggccagatacattatttattaaatgaacctaaaaagttgtttttt 47154768  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 11534809 - 11534881
Alignment:
Q  340 aatgtatctggtctatataaaggtcagagaaattacttattgaatgaacctaaaaaattgtgttttctttata 412  Q
    ||||||| ||||||||||| |||||||| | ||||  |||| |||||| |||||||||||| |||| ||||||    
T  11534809 aatgtatatggtctatatataggtcagatacattaaatattcaatgaatctaaaaaattgtattttgtttata 11534881  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 26331223 - 26331289
Alignment:
Q  292 ggtcacgtttataagacaaaaacaattttttatgttcgtcgaataaccaatgtatctggtctatata 358  Q
    |||||| ||||||||  |||||||||||| || |||| | |||| || |||||||||||||||||||    
T  26331223 ggtcacatttataagcaaaaaacaattttctaggttcattgaatgactaatgtatctggtctatata 26331289  T

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