View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-27 (Length: 532)
Name: NF3119A-Insertion-27
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 63 - 532
Target Start/End: Original strand, 4060427 - 4060903
Alignment:
| Q |
63 |
tgataacttttttgtgagttgtctattgtttattccaatcaagagaggagggaatatcatagtagtgtcccacataattcgttattatcatcgtattttt |
162 |
Q |
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| T |
4060427 |
tgataacttttttgtgagttgtctattgtttattcaaatcaagggaggagggaaaatcatagtagtgtcccacataattcgttattatcatcgtattttt |
4060526 |
T |
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| Q |
163 |
gtttttcattaaatagtgtcatgattactttgaagttg-atttttcctttgttcaatgggaggatgaacttctctctgtgacaaagcatagttcaagacg |
261 |
Q |
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| T |
4060527 |
gtttttcattaaatagtgtcatgactactttgtagatgtattttttctttgtttaatgggaggatgaacttctctttatgacaaagtatagttcaagacg |
4060626 |
T |
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| Q |
262 |
atttgatccaatataatcttgattgcactttnnnnnnnnnnnnnncaagcgatatgaaagatcaagagtagagtcctt-aaaaaagaaaacgagcacaat |
360 |
Q |
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| T |
4060627 |
atttggtccaatataatcttgattgca-ttttaaaaaaataaaaagaagcgatatgaaagatcaagagtagagtccttaaaaaaaaaaaacgagcacaat |
4060725 |
T |
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| Q |
361 |
tcagttgatatttgctccatagannnnnnnnnnnngaagtatttgctccatagattgaagtgactgtctttgaaaga--nnnnnnnctattaaagttgtg |
458 |
Q |
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| T |
4060726 |
tcagttgatatttgctccatagatatttttttgaagaagtattttctccatagattgaagtgaccgtctttgaaagatttttttttctattaaagttgtg |
4060825 |
T |
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| Q |
459 |
ggatttgttagaggacatgttta----cstcaaccacaataaccaactaattgatgatgaaaatggagaaattcttgc |
532 |
Q |
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| T |
4060826 |
ggatttgttagaggacatgtttacgtgcgtcaaccacaataaccaactaattgatgatgaaaatggagaaattcttgc |
4060903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 4060168 - 4060252
Alignment:
| Q |
10 |
aattatatgagagtgtgtcattttttcyttgtataaacattgcaaatttagtgtgataacttttttgtgagttgtctattgtttatt |
96 |
Q |
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| T |
4060168 |
aattatatgagagtgtgtcattttttctttgta--aacattgtaaatttagtgtgataacttttttgtgagttgtctatcgtttatt |
4060252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 36751719 - 36751783
Alignment:
| Q |
171 |
ttaaatagtgtcatgattactttgaagttgatttttcctttgttcaatgggaggatgaacttctc |
235 |
Q |
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| T |
36751719 |
ttaaatagtgatatggctactttgaagttgaatcttcctttgtttgatggaaggatgaacttctc |
36751783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 37642589 - 37642676
Alignment:
| Q |
147 |
ttatcatcgtatttttgtttttcattaaatagtgtcatgattactttgaagttgatttttcctttgttcaatgggaggatgaacttctc |
235 |
Q |
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| T |
37642589 |
ttatcatcttatttgtgtttttcgtaaga-agtgttatgactactttgaagttgaatgttcctttgtttgaagggaggatgaatttctc |
37642676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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