View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3119A-Insertion-3 (Length: 578)
Name: NF3119A-Insertion-3
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-3 |
 | |
|
| [»] chr5 (16 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 7 - 578
Target Start/End: Original strand, 3299632 - 3300211
Alignment:
| Q |
7 |
agatacaaaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3299632 |
agatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgat |
3299731 |
T |
|
| Q |
107 |
tatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299732 |
tatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaa |
3299831 |
T |
|
| Q |
207 |
ccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299832 |
ccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgtt |
3299931 |
T |
|
| Q |
307 |
ttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299932 |
ttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactc |
3300031 |
T |
|
| Q |
407 |
tgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaagccatgcatgtcattaattatattcggcatataaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3300032 |
tgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaa |
3300131 |
T |
|
| Q |
507 |
gta--------catttcacctcacccttccatttactttcctgtcttccatgtgttgcactcaaacatggctagttttac |
578 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300132 |
gtacctttcaccatttcacctcaccctttcatttactttcctgtcttccatgtgttgcactcaaacatggctagttttac |
3300211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 7 - 578
Target Start/End: Original strand, 3392525 - 3393104
Alignment:
| Q |
7 |
agatacaaaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392525 |
agatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgat |
3392624 |
T |
|
| Q |
107 |
tatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392625 |
tatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaa |
3392724 |
T |
|
| Q |
207 |
ccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392725 |
ccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgtt |
3392824 |
T |
|
| Q |
307 |
ttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392825 |
ttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactc |
3392924 |
T |
|
| Q |
407 |
tgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaagccatgcatgtcattaattatattcggcatataaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3392925 |
tgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaa |
3393024 |
T |
|
| Q |
507 |
gta--------catttcacctcacccttccatttactttcctgtcttccatgtgttgcactcaaacatggctagttttac |
578 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3393025 |
gtacctttcaccatttcacctcaccctttcatttactttcctgtcttccatgtgttgcactcaaacatggctagttttac |
3393104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 367
Target Start/End: Complemental strand, 1163676 - 1163333
Alignment:
| Q |
27 |
ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga |
126 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1163676 |
ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga |
1163577 |
T |
|
| Q |
127 |
tctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttaga |
226 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| || | || | ||| |||||||||| |
|
|
| T |
1163576 |
tctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccccttttat |
1163477 |
T |
|
| Q |
227 |
agacctttttatccattggaggatttgcttgatg---gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac |
323 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163476 |
agacctttttttccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac |
1163377 |
T |
|
| Q |
324 |
caaaacaaggaagatgcttttcatttattagcttttttctattt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1163376 |
aaaaacaaggaagatgcttttcatttattagcttttttatattt |
1163333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 40418404 - 40418758
Alignment:
| Q |
14 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
40418404 |
aaccttcctgctgccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctcttcatgataagtgggaatctgattatcaac |
40418500 |
T |
|
| Q |
114 |
tcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatc-a |
212 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||| || ||||||| ||||||| ||| |||||| || | ||| ||| || || |
|
|
| T |
40418501 |
tcttcttcaatgatctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcgt |
40418600 |
T |
|
| Q |
213 |
aatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgtta |
312 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | || |||||||||| |
|
|
| T |
40418601 |
aatccccc-ctaccagaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttaatgttttgttt |
40418699 |
T |
|
| Q |
313 |
cttccaataac--caaaa--caaggaagatgcttttcatttattagcttttttctattt |
367 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
40418700 |
gttccaataacaacaaaaatcaaggaagatgcttttcatttattaggttctttctattt |
40418758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 27 - 272
Target Start/End: Original strand, 1850063 - 1850293
Alignment:
| Q |
27 |
ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga |
126 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1850063 |
ccattttgattaccaagattagttttgctaaagaggagaatggtagagttattcctgttcaggataagtgggaatctgattatcaactcttcttaaaaga |
1850162 |
T |
|
| Q |
127 |
tctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttaga |
226 |
Q |
| |
|
| ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| || | || |||||| |||||| |||||| |
|
|
| T |
1850163 |
tttacaacaagaccctaaactcctcttcg---------------accgaaatccaaccaactgccatccatctggcccacccatcagatccccttttaga |
1850247 |
T |
|
| Q |
227 |
agacctttttatccattggaggatttgcttgatggatgatccactt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1850248 |
agacctttttatccattggaggatttgcttgatggatgatctactt |
1850293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 39879941 - 39880297
Alignment:
| Q |
14 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39879941 |
aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac |
39880037 |
T |
|
| Q |
114 |
tcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatca- |
212 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||| ||||| | ||||||| ||||||| ||| |||||| || | ||| ||| || ||| |
|
|
| T |
39880038 |
tcttcttcaatgatctacaacaaaacactaaactcatcttcagcgtaagagcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcag |
39880137 |
T |
|
| Q |
213 |
aatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgtta |
312 |
Q |
| |
|
|||||||| || |||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||| || |
|
|
| T |
39880138 |
aatccccc-ctaccagacctttttttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt-ttt |
39880235 |
T |
|
| Q |
313 |
cttccaataacca-------aaacaaggaagatgcttttcatttattagcttttttctattt |
367 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39880236 |
gttccaataataacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt |
39880297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 38987826 - 38988180
Alignment:
| Q |
14 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38987826 |
aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac |
38987922 |
T |
|
| Q |
114 |
tcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaa |
213 |
Q |
| |
|
||||||| || ||||||||||||||| || |||| |||||| | || |||| ||||||||||| || |||| | | ||| |||| || || |
|
|
| T |
38987923 |
tcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcagcctaccgaaatccaaacaaccactacacatatgacgggcccttcgt |
38988022 |
T |
|
| Q |
214 |
atccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttac |
313 |
Q |
| |
|
| |||| || ||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
38988023 |
agacccccctaccagaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttg |
38988122 |
T |
|
| Q |
314 |
ttccaataacca----aaacaaggaagatgcttttcatttattagcttttttctattt |
367 |
Q |
| |
|
|||||||||| | || |||||||| |||| |||||||||||| || ||||||||| |
|
|
| T |
38988123 |
ttccaataacaacaacaatcaaggaagctgctcttcatttattaggttctttctattt |
38988180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 39726545 - 39726906
Alignment:
| Q |
14 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39726545 |
aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac |
39726641 |
T |
|
| Q |
114 |
tcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaa |
213 |
Q |
| |
|
||||||| || ||||||||||||||| || |||| |||||| | || |||| ||||||||||| || |||| | | ||| |||| || || |
|
|
| T |
39726642 |
tcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcaccctaccgaaatccaaacaaccactacacatatgacgggcccttcgt |
39726741 |
T |
|
| Q |
214 |
atccccctttagaagacctttttatccattggaggatttgcttgatggatgat----ccacttacaagcttaaacaaacatcacttctattgatgttttg |
309 |
Q |
| |
|
| |||| || ||||||||| ||||||||||||| |||||||| ||||||| | | |||| |||||||||||| ||||| | | ||||||||||| |
|
|
| T |
39726742 |
agacccccctatcagaccttttgatccattggaggacttgcttgacggatgatctagctagttactagcttaaacaaaaatcacctttgttgatgttttg |
39726841 |
T |
|
| Q |
310 |
ttacttccaataacca-------aaacaaggaagatgcttttcatttattagcttttttctattt |
367 |
Q |
| |
|
|| ||||||||| | || |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39726842 |
tttgttccaataataacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt |
39726906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 39168974 - 39169101
Alignment:
| Q |
15 |
accttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtaga---gttgttgctgttcaggataagtgggaatctgattatca |
111 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||| | || || ||||||||| ||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
39168974 |
accttcctgctgcaattttgattaccaagagtagttatg---atgaagaaaatggtagaattgttgttgttgttgagggtaagtgggaatctgattatca |
39169070 |
T |
|
| Q |
112 |
actcttcttaaaagatctacaacaagacact |
142 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
39169071 |
actctttttaaaagatctacaacaagacact |
39169101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 1163288 - 1163224
Alignment:
| Q |
399 |
acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtg |
463 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163288 |
acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtg |
1163224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 363 - 453
Target Start/End: Original strand, 1850346 - 1850444
Alignment:
| Q |
363 |
tatttattccgataacaagaacaacta--------gttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa |
453 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1850346 |
tatttattccgataacaagaacaaatacttaaaaggttcttttcacttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa |
1850444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 39880491 - 39880540
Alignment:
| Q |
510 |
catttcacctcacccttccatttactttcctgtcttccatgtgttgcact |
559 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
39880491 |
catttcacctcaccctaccatttactttcctgtcttccatatgttgcact |
39880540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 39880327 - 39880405
Alignment:
| Q |
365 |
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
446 |
Q |
| |
|
|||||||| || |||||||||| || ||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39880327 |
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
39880405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 40418782 - 40418860
Alignment:
| Q |
365 |
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
446 |
Q |
| |
|
|||||||| || |||||||||| || ||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40418782 |
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
40418860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 39400042 - 39400084
Alignment:
| Q |
88 |
ggataagtgggaatctgattatcaactcttcttaaaagatcta |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
39400042 |
ggataagtggcaatctgattatcaactcttcttagaagatcta |
39400084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 38988229 - 38988282
Alignment:
| Q |
393 |
cttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
446 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38988229 |
cttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
38988282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 8e-47; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 25912252 - 25912122
Alignment:
| Q |
14 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25912252 |
aaccttcatgctgccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
25912156 |
T |
|
| Q |
114 |
tcttcttaaaagatctacaacaagacactaaact |
147 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| |
|
|
| T |
25912155 |
tcttcttaaattatctacagcaagaccctaaact |
25912122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 223 - 367
Target Start/End: Complemental strand, 44444543 - 44444395
Alignment:
| Q |
223 |
tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa |
322 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | ||||||||||||| |||||||| |
|
|
| T |
44444543 |
tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa |
44444444 |
T |
|
| Q |
323 |
ccaaaa----caaggaagatgcttttcatttattagcttttttctattt |
367 |
Q |
| |
|
| |||| ||||||| |||| ||||||||||||| || ||||||||| |
|
|
| T |
44444443 |
cgaaaacaatcaaggaatatgcctttcatttattaggttatttctattt |
44444395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 227 - 322
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
| Q |
227 |
agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa |
322 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | ||||||||||||| ||||||||| |
|
|
| T |
25912046 |
agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa |
25911951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 511 - 552
Target Start/End: Complemental strand, 25911698 - 25911657
Alignment:
| Q |
511 |
atttcacctcacccttccatttactttcctgtcttccatgtg |
552 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25911698 |
atttcacctcaccctaccatttactttcctgtcttccatgtg |
25911657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 44444674 - 44444614
Alignment:
| Q |
77 |
gttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaag |
137 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||| |||| ||||||||| ||||| |||||| |
|
|
| T |
44444674 |
gttgttgttcaggataaattggaatctgattataaacttttcttaaaatatctaaaacaag |
44444614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
| Q |
410 |
tgcaatttgcaatttctgtttgatatttatgtttatt |
446 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
25911821 |
tgcagtttgcaatttctgtttgatacttatgtttatt |
25911785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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