View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-4 (Length: 475)
Name: NF3119A-Insertion-4
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 25777557 - 25777280
Alignment:
| Q |
8 |
catctatattgtaattttgacgaagaaccttgtcaatagaatcccaaaggttcacatcacgctaaacttaagtaacacttgggcactctatcaaaacatg |
107 |
Q |
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| T |
25777557 |
catctatattgtaattttgatgaagaaccttgtcaattgaatcccaaaggttcacatcacgctaaacttaagtaacacttgggcactctatcaaaacatg |
25777458 |
T |
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| Q |
108 |
gatgatgccttcataattacttccacaaagatcacaatcaagtggccaagacactcctatattattactaaggcgtgctcgagttgggaaccacccatgg |
207 |
Q |
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| T |
25777457 |
gatgatgccttcataattacttccacaaagatcacaatcaagtggccaagacactcctatattattactaaggcgtgctcgagttgggaaccacccatgg |
25777358 |
T |
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| Q |
208 |
cacaccctatgaacataattcttgacctgaggaggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
285 |
Q |
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| T |
25777357 |
cacaccctatgaacataattcttgacctgaggaggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
25777280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 376 - 475
Target Start/End: Complemental strand, 1538928 - 1538829
Alignment:
| Q |
376 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtctttgttttcttactgtag |
475 |
Q |
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| T |
1538928 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
1538829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 376 - 475
Target Start/End: Complemental strand, 17768975 - 17768876
Alignment:
| Q |
376 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtctttgttttcttactgtag |
475 |
Q |
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| T |
17768975 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
17768876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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