View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-5 (Length: 713)
Name: NF3119A-Insertion-5
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 234 - 713
Target Start/End: Original strand, 38931659 - 38932131
Alignment:
| Q |
234 |
gccatttccgatgttctcgtttatctggttcgtcttcaacttcttcttcttcctctactctcttttctccatgctcactatgtgtttttgactcttctga |
333 |
Q |
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| T |
38931659 |
gccattttcgatgttctcgtttatctggttcgtcttcaacttcttcttcttcctctactctcttttctccatgctctctatgtgtttttgcctcttctga |
38931758 |
T |
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| Q |
334 |
tcttatttctggttccaattccaaaggtggccttataatactaagacctcctttaacatgtataatttggtgctttctatgttcttcatctggagattga |
433 |
Q |
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| T |
38931759 |
tcttatttctggttccaattccaaaggtggccttataatactaagacctcctttaacatgtataatttggtgctttctatgttgttcatcttgagattga |
38931858 |
T |
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| Q |
434 |
agctttctaattatactttctttcactttcaaaacttgtcccaagaaacgtgaatcaaaaccactgaacatgttgttagtttcttcttctttatcaccac |
533 |
Q |
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| T |
38931859 |
agctttctaattatactttctttcactttcaaaacttgtcccaagaaacgtgaatcaaaaccactgaacatgttgttagtttcttcttctttatcaccac |
38931958 |
T |
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| Q |
534 |
gctttctaccactctgttttactggattcccagctagataaaatctctacatgacatgacatgaatnnnnnnntgaatcatttatatacaacaaagttgg |
633 |
Q |
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| T |
38931959 |
gctttcttccactctgttttactggattcccagctagataaaatctctacatcacatga-ataaa-----aaatgaatgatttatatataacaaagtt-g |
38932051 |
T |
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| Q |
634 |
gttgcatttaggagtaattgttagattataattaatgttgcttactcttgggatacgatcgagttggtttagtttattgg |
713 |
Q |
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| T |
38932052 |
gttgcatttaggagtaattgttagattataattaatgttgcttactcttgggatacgatcgagttggtttagtttattgg |
38932131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 38931448 - 38931593
Alignment:
| Q |
8 |
gaaggatcagctatgttctcatgaagcttcaatgtgcaaacggtttcatcgaagaagttgtgttgttcttcatgttctctggttcttgttctctcaccat |
107 |
Q |
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| T |
38931448 |
gaaggatcagctatgttctcatgaagcttcaatgtgcaaacagtttcatcgaagaagttgtgttgtccttcatgttctctggttcttgttctctcaccat |
38931547 |
T |
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| Q |
108 |
ggcttctttctttttcaccatggtgacaatgctctttagtttttgt |
153 |
Q |
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| T |
38931548 |
ggcttctttctttttcaccatggtgacaatgctctttagtttttgt |
38931593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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