View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-6 (Length: 380)
Name: NF3119A-Insertion-6
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 33817271 - 33817648
Alignment:
| Q |
8 |
tatcaatggtacccaacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcaggggcatttctaaaccgg |
107 |
Q |
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| T |
33817271 |
tatcaatggtacccaacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcacgggcatttctaaactgg |
33817370 |
T |
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| Q |
108 |
tggataatggtgatttagagttgatgtcaagcactagaagctgtgatgttccatttcatactttgtatgcagatcacataatgatatttcgcaatgggaa |
207 |
Q |
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| T |
33817371 |
tggataatggtgatttagagttgatgtcaagcactagaagttgtgatgttccatttcatactttgtatgcagatcacataatgatatttagcaatgggaa |
33817470 |
T |
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| Q |
208 |
ggcatcttgcataaattcactgataaaccttttcactagatatgcacaggtttctggtca-gtggtcagcaatagcaaatcaactattttctcggggtca |
306 |
Q |
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| T |
33817471 |
ggcatcttgcataaattcactgataaaccttttcactagatatgcacaggtttctggtcaggtggtcagcaatagcaaatcaactattttctcggggtca |
33817570 |
T |
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| Q |
307 |
atctct----ataatagattacaacatattgttgaccttattggttttcaagtgggttctctaccattcattttgtca |
380 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33817571 |
atctctaataataatagattacaacatattgttgaccttactggttttcaagtgggttctctaccattcattttgtca |
33817648 |
T |
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