View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119A-Insertion-7 (Length: 302)
Name: NF3119A-Insertion-7
Description: NF3119A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119A-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 33062578 - 33062291
Alignment:
| Q |
6 |
caaaatgatgtcactgatcttattaannnnnnnngatatgaaatattgtttatgaaatacc-atttactctgactttct--gactccgattctctttctc |
102 |
Q |
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| T |
33062578 |
caaaatgatgtcaccgagcttattaatttttcttgatatgaaatattgtttatgaaatacccattcactctgggtttctctgactccaattttcttcctc |
33062479 |
T |
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| Q |
103 |
ttgcattattatctagataaatatattcttataacattattcatattatacacnnnnnnnnnnnnnnntacactagatacaaatttaaatcaaattgaca |
202 |
Q |
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| T |
33062478 |
ttgcatcattatctatataaacatatttttagaacattattcatattatacacaaaaagatata----tacactagatacaaatttaactcaacttgaca |
33062383 |
T |
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| Q |
203 |
tgtggatgttgtaatccatggtttgatgctgatatattttatattcttgcttagttgtttgctgttcctgcatgttggatttggagttctac |
294 |
Q |
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| T |
33062382 |
tgtggatgttgtcatccatggtttgatggtgaaatattgtatattcttgcttagttgtttgttgttcctacatgttggatttggacttctac |
33062291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 33081894 - 33081783
Alignment:
| Q |
9 |
aatgatgtcactgatcttattaannnnnnnngatatgaaata---ttgtttatgaaataccatttactctgactttctgactccgattctctttctcttg |
105 |
Q |
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| T |
33081894 |
aatgatgtcactgatcttattaatttttcttgatatgaaatactattgtttatgaaataccatttactctgactttctgactccgattctcttcctcttg |
33081795 |
T |
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| Q |
106 |
cattattatcta |
117 |
Q |
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| T |
33081794 |
cattattatcta |
33081783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 33081752 - 33081689
Alignment:
| Q |
238 |
attttatattcttgcttagttgtttgctgttcctgcatgttggatttggagttctactatacta |
301 |
Q |
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| T |
33081752 |
attttatattcttgcttagttgtttgttgttcctacatgttggatttggacttctactatacta |
33081689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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