View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119R-Insertion-10 (Length: 584)
Name: NF3119R-Insertion-10
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119R-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 564
Target Start/End: Original strand, 35843550 - 35844105
Alignment:
| Q |
8 |
agtaatataatttgaaaaaagacagaaaatgagaattattttttgagagtgtgagtaattgagaatgttagaaattaatatttagaaatttgattgtgac |
107 |
Q |
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| T |
35843550 |
agtaatataatttgaaaa-agacagaaaatgagaattattttttgagagtgtgagtaattgagaatgttagaaattaatatttagaaatttgattgtgac |
35843648 |
T |
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| Q |
108 |
aagtactaatatttacaccaaagtgcattaactcccggagattgaagtaggtacagaaataaataaatcagaatcagttactttcactatgacttgtagt |
207 |
Q |
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| T |
35843649 |
aagtactaatatttacaccaaagtgcattaactcccggagattgaagtaggtacagaaataaataaatcagaatcagttactttcactatgacttgtagt |
35843748 |
T |
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| Q |
208 |
tagctcacccggtcaacggtggctcattgttggcgccaccacacaaccaccattgccggacaatttcagagacctatagaaaaatgaaacattccaatga |
307 |
Q |
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| T |
35843749 |
tagctcacccggtcaacggtggttcattgttggcgccaccccacaaccaccattgccggacaatttcagagacctatagaaaaatgaaacattccaatga |
35843848 |
T |
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| Q |
308 |
caccagtggattttccagcgactcattagcacgagaccttttactgtccatggccggcatctctgttttccggcgacctttctccggcagcgttgttctg |
407 |
Q |
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| T |
35843849 |
caccagtggattttccagcgactcattagcacgagaccttttaccgtccatggccggcatctctgttttccggcgacctttctccggcagcgttgttctg |
35843948 |
T |
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| Q |
408 |
tcccttgcaactggagctcgactcgtttttcttgcagattgactccgacccacgacgggtctagcaacgctggtgtcggtacacgtcgccggtgaccggg |
507 |
Q |
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| T |
35843949 |
tcccttgcaactggagctcgactcgtttttcttgcagattgactccgacccacgactggtctagcaacgctggtgtcggtacacgtcgccggtgaccggg |
35844048 |
T |
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| Q |
508 |
accgtcggaaagaattctcgccggaatctctccggcgacgcattccctcgttgacca |
564 |
Q |
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| T |
35844049 |
accgtcggaaagaattctcgccggaatctctccggcgacgcattccctcgttgacca |
35844105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 3274772 - 3274732
Alignment:
| Q |
285 |
agaaaaatgaaacattccaatgacaccagtggattttccag |
325 |
Q |
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| T |
3274772 |
agaaagatgaagcattccaatgacacaagtggattttccag |
3274732 |
T |
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