View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119R-Insertion-11 (Length: 531)
Name: NF3119R-Insertion-11
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119R-Insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Complemental strand, 1883796 - 1883335
Alignment:
| Q |
7 |
caacaaccattatcattaacatcatattattgacattatccattagattaaagaaggttagttttctaatgatttttcaattttgtttaatttactatag |
106 |
Q |
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| T |
1883796 |
caacagccattatcattaacatcatattattgacattatccattagattaaagaaggttagttttctaatgatttttcaattttgtttaatttactatag |
1883697 |
T |
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| Q |
107 |
gtaacaaaaacattgaacaatttttgtttcttgagatggtttacaaacattatagcaatagtcctttcnnnnnnnnnnnn---cattatagtaatattaa |
203 |
Q |
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| T |
1883696 |
gtaacaaaaacattgaacactttttgtttcttgagatggtttacaaacattatagtaatagtcctttcaaaaaaaaaaaaaaacattatagtaatattaa |
1883597 |
T |
|
| Q |
204 |
caaaatatatgatgtaagctaaatggtgttacattacatcttaacgttctatttaagattttaattgatcaaattgaaatatttggtgatgaaggttgca |
303 |
Q |
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| T |
1883596 |
caaaatatatgatgtaagctaaatggtgttacattacatcttaacgttctatttaagattttaattgatcaaattgaaatatttggtgatgaaggttgca |
1883497 |
T |
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| Q |
304 |
tgttgaaagaggaataaatttgagcatttgaagatgggaaattcaaagaaagaagaagaaagagttgaaagaataattcgaggtcctttaaaacttcaag |
403 |
Q |
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| T |
1883496 |
tgttgatagaggaataaatttgagcatttgaagatgggaaattcaaagaaagaagaagaaagagttgaaagaataattcgaggtcttttaaaacttcaag |
1883397 |
T |
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| Q |
404 |
aaaatcgaagatgtatcaattgcaatatcttggtattatttaatcatttcttagcaattcta |
465 |
Q |
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| T |
1883396 |
aaaatcgaagatgtatcaattgcaatatcttggtattatttaatcatttcttagcaattcta |
1883335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 1883316 - 1883276
Alignment:
| Q |
481 |
gtgattaaatataataattataaacttctagattttagttt |
521 |
Q |
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| T |
1883316 |
gtgattaaatataataattataaacttctagattttagttt |
1883276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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