View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119R-Insertion-12 (Length: 480)
Name: NF3119R-Insertion-12
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119R-Insertion-12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 480
Target Start/End: Complemental strand, 33141042 - 33140571
Alignment:
| Q |
9 |
tatccaacaattcagaaactacaaaagaaagacagaaacaattaccataaagacttcaagccgcttagaaccaattgaactcattccggcaacagcttta |
108 |
Q |
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| T |
33141042 |
tatccaacaattcagaaactacaaaagaaagacaggaacaattaccataaagacttcaagccgcttagaaccaattgaactcattccagcaacagcttta |
33140943 |
T |
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| Q |
109 |
cgcgcagcaggagataatttattctgacaaaccataatcccattatcaacattctccttcaacatcctattaataatacctctaacaatattaacaccaa |
208 |
Q |
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| T |
33140942 |
cgcgcagcaggagataatttattctgacaaaccataatcccattatcaacattctccttcaacatcctattaataatacctctaacaatattaacaccaa |
33140843 |
T |
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| Q |
209 |
gtttagcatcatcaaagaagaacacacagattttttcagatgtcttgtttctatgtgttgtgttgatttctaactgttctcgtttcatgtgttcgccgaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33140842 |
gtttagcatcatcaaagaagaacacacagattttttcagataggttgtttctatgtgttgtgttgatttctaactgttctcgtttcatgtgttcgccgaa |
33140743 |
T |
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| Q |
309 |
tttgaagatgaaatcttctcgagacatggtgagttgggtttcgtcgacgaggtagtttctgtcgaatagcatttggagaatggttttgcggattctgtat |
408 |
Q |
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| T |
33140742 |
tttgaagatgaaatcttctcgagacatggtaagttgggtttcgtcgacgaggtagtttctgtcgaatagcatttggagaatggttttgcggattctgtat |
33140643 |
T |
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| Q |
409 |
agttttgttatgtcttcatcggtaaacaccattgttgaacctttgcgtcggctgttcttttgttatcgcagt |
480 |
Q |
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| T |
33140642 |
agttttgttatgtcttcttcggtaaacaccattgttgaacctttgcgtcggctgttcttttgttatcgcagt |
33140571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 29 - 442
Target Start/End: Complemental strand, 33135137 - 33134724
Alignment:
| Q |
29 |
acaaaagaaagacagaaacaattaccataaagacttcaagccgcttagaaccaattgaactcattccggcaacagctttacgcgcagcaggagataattt |
128 |
Q |
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|||||| ||||| |||||||||||||| |||||||||||| ||||||||||||| |||||||||| | | |||||| | | ||| | |||||||||| |
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| T |
33135137 |
acaaaacaaagagagaaacaattaccagaaagacttcaaggcgcttagaaccaactgaactcatttcagtaacagcacttctagcataatgagataattt |
33135038 |
T |
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| Q |
129 |
attctgacaaaccataatcccattatcaacattctccttcaacatcctattaataatacctctaacaatattaacaccaagtttagcatcatcaaagaag |
228 |
Q |
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| T |
33135037 |
agtctgacaaaccaaaatcccactatcaacattctcttgcaacatcctagtaataaaacctctaacaatcttaacaccaagtttagcatcatcagagaag |
33134938 |
T |
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| Q |
229 |
aacacacagattttttcagatgtcttgtttctatgtgttgtgttgatttctaactgttctcgtttcatgtgttcgccgaatttgaagatgaaatcttctc |
328 |
Q |
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| T |
33134937 |
aaaacacagattttttcagatgggttgtttctatgtgttttgttgatttctaactgttctcgtttcatgtgttcgccgtatttgaagatgaaatcttcac |
33134838 |
T |
|
| Q |
329 |
gagacatggtgagttgggtttcgtcgacgaggtagtttctgtcgaatagcatttggagaatggttttgcggattctgtatagttttgttatgtcttcatc |
428 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||||| | ||||||||||||||||| || |
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| T |
33134837 |
gagacatggtgagttcggtttcttcgacgaggtagtttctgtcggataacatttggagaagggttttctggattctgaaaagttttgttatgtcttcttc |
33134738 |
T |
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| Q |
429 |
ggtaaacaccattg |
442 |
Q |
| |
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|| ||||||||||| |
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| T |
33134737 |
ggaaaacaccattg |
33134724 |
T |
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