View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119R-Insertion-13 (Length: 442)
Name: NF3119R-Insertion-13
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119R-Insertion-13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 9 - 442
Target Start/End: Complemental strand, 1855300 - 1854867
Alignment:
| Q |
9 |
catttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcataaatttggaatttatgtaa |
108 |
Q |
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| T |
1855300 |
catttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaagtgagcataaatttggaatttatgtaa |
1855201 |
T |
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| Q |
109 |
catggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtgtaattgcagccaggtaggacttgtttag |
208 |
Q |
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| T |
1855200 |
catggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaacttttacacctccacaggtgtaattgcagcctggtaggacttgtttag |
1855101 |
T |
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| Q |
209 |
gttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgctaatgcagcaagtattattaatacttgcaggaccttcatttttaaattggagta |
308 |
Q |
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| T |
1855100 |
gttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgctaatgcagcaagtattattaatacttgcaggaccttcatttttaaattggagta |
1855001 |
T |
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| Q |
309 |
ctgactgacttgtggcctagagtaagggtgtttcgttatttataataaaaacccttccaaattttcatggtattttgctaatttaaataaaagttgcatt |
408 |
Q |
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| T |
1855000 |
ctgactgacttgtggcctggagtaagggtgtttcgttatttataataaaaacccttccaaattttcatggtattttgctaatttaaataaaagttgcatt |
1854901 |
T |
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| Q |
409 |
gacttgcaagttgcatggaagacctgaccatata |
442 |
Q |
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| T |
1854900 |
gacttgcaagttgcatggaagacctgaccatata |
1854867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 1817969 - 1818102
Alignment:
| Q |
90 |
aaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtgtaattgcag |
189 |
Q |
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| T |
1817969 |
aaattttgaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaattgttaaatctccacaggtgtaattgcag |
1818068 |
T |
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| Q |
190 |
ccaggtaggacttgtttaggttgatcagatgcaa |
223 |
Q |
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| T |
1818069 |
cctggtaggacttgtttaggttgatcagatgcaa |
1818102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 1844913 - 1845015
Alignment:
| Q |
103 |
atgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtgtaattgcagccaggtaggactt |
202 |
Q |
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| T |
1844913 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtatagttgcagccaggtaggactt |
1845012 |
T |
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| Q |
203 |
gtt |
205 |
Q |
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||| |
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| T |
1845013 |
gtt |
1845015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 37566827 - 37566744
Alignment:
| Q |
9 |
catttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcataaa |
92 |
Q |
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| T |
37566827 |
catttgaccgtgcggatttatgtctaggacttgtagattcttaccacggattaatttggagttgtttgtacaagtgagcttaaa |
37566744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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