View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119R-Insertion-20 (Length: 212)
Name: NF3119R-Insertion-20
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119R-Insertion-20 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 23276219 - 23276016
Alignment:
| Q |
9 |
gttagttacggcggcgacggttatcttcatcttctacccctcaatccgatccatttcttcatctgttcttcactgcaatgaccgaatcaacatcgttcct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23276219 |
gttagttacggcggcgacggttatcttcatcttctacctctcaatccgatccatttcttcatctgttcttcactgcaatgaccgaatcaacatcgtttct |
23276120 |
T |
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| Q |
109 |
tcagcctgcaaatcctaaattcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaatattggaaacttattgaacat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23276119 |
tcagcctgcaaatcctaaattcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaatattggaaacttattaaacat |
23276020 |
T |
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| Q |
209 |
ggtg |
212 |
Q |
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|||| |
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| T |
23276019 |
ggtg |
23276016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 23401793 - 23401995
Alignment:
| Q |
9 |
gttagttacggcggcgacggttatcttcatcttctacccctcaatccgatccatttcttcatctgttcttcactgcaatgaccgaatcaacatcgttcct |
108 |
Q |
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|||||||| || ||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23401793 |
gttagttatggaggctacggttatcttcatcttctacctctcaatccgatccatt-cttcatctgttcttcactgcaatgacagaatcaacatcgttcct |
23401891 |
T |
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| Q |
109 |
tcagcctgcaaatcctaaattcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaatattggaaacttattgaacat |
208 |
Q |
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| T |
23401892 |
tcagcctgcaaatcctaaattcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaatattggaaacttattgaacat |
23401991 |
T |
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| Q |
209 |
ggtg |
212 |
Q |
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|||| |
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| T |
23401992 |
ggtg |
23401995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 7852759 - 7852697
Alignment:
| Q |
131 |
gatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaatattgg |
193 |
Q |
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||||| ||||||||||| ||||| ||||| ||||||||||||||| ||| |||||||||||| |
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| T |
7852759 |
gatggattctatgatcactggtccatgttaatggagaatcttcttcgctctaaagaatattgg |
7852697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 6582785 - 6582659
Alignment:
| Q |
84 |
caatgaccgaatcaacatcgttccttcagcctgcaaatcctaaattcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaa |
183 |
Q |
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||||||| ||||| | ||||| ||||| ||||||| |||||| |||||||||||||| |||||||||| ||||| ||||||||||||||| ||| ||| |
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| T |
6582785 |
caatgactaaatcatcctcgtttcttcaacctgcaattcctaagttcgatggtttctacaatcattggtctatgttaatggagaatcttcttcgctccaa |
6582686 |
T |
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| Q |
184 |
agaatattggaaacttattgaacatgg |
210 |
Q |
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|||||||||||| ||||||||| |||| |
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| T |
6582685 |
agaatattggaatcttattgaatatgg |
6582659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 42968116 - 42968225
Alignment:
| Q |
101 |
tcgttccttcagcctgcaaatcctaaattcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaatattggaaactta |
200 |
Q |
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||||| ||||| ||||||| ||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| | | ||||||||| ||||| |||| |
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| T |
42968116 |
tcgtttcttcaacctgcaattccaaaattcgacggtttctacgatcattggtccatgttgatggagaatcttctccgttccaaagaatactggaatctta |
42968215 |
T |
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| Q |
201 |
ttgaacatgg |
210 |
Q |
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| |||||||| |
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| T |
42968216 |
tcgaacatgg |
42968225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 601433 - 601561
Alignment:
| Q |
84 |
caatgaccgaatcaacatcgttccttcagcctgcaaatcctaaattcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaa |
183 |
Q |
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||||||| |||||| | || |||||||| ||||||| ||| | ||||||||||| || ||||||||||| ||||| ||||||||||||||| | | ||| |
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| T |
601433 |
caatgacggaatcatcctcattccttcaacctgcaattcccaggttcgatggtttttacgatcattggtctatgttaatggagaatcttcttcgttccaa |
601532 |
T |
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| Q |
184 |
agaatattggaaacttattgaacatggtg |
212 |
Q |
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||| |||||||| || ||||||||||||| |
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| T |
601533 |
agagtattggaatctcattgaacatggtg |
601561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 62369 - 62245
Alignment:
| Q |
86 |
atgaccgaatcaacatcgttccttcagcctgcaaatcctaaattcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaag |
185 |
Q |
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||||| ||||| ||||||| ||||| ||||||| || |||| ||||||||||||||||||||||| ||||||||||| || |||||| | | ||||| |
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| T |
62369 |
atgacagaatcttcatcgtttcttcaacctgcaacaccaaaatatgatggtttctatgatcattggtccatgttgatggaaaaccttcttcgtttcaaag |
62270 |
T |
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| Q |
186 |
aatattggaaacttattgaacatgg |
210 |
Q |
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|||||||||| || ||||||||||| |
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| T |
62269 |
aatattggaacctgattgaacatgg |
62245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 29945702 - 29945591
Alignment:
| Q |
99 |
catcgttccttcagcctgcaaatcctaaattcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaatattggaaact |
198 |
Q |
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||||||| ||||| ||||||| || || ||||| |||||||||||||||||||| ||||| ||||| ||||| ||| | | |||||| |||||| | || |
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| T |
29945702 |
catcgtttcttcaacctgcaataccaaagttcgaaggtttctatgatcattggtccatgttaatggaaaatctccttcgttccaaagagtattggcacct |
29945603 |
T |
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| Q |
199 |
tattgaacatgg |
210 |
Q |
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||||||||||| |
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| T |
29945602 |
gattgaacatgg |
29945591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 46434457 - 46434399
Alignment:
| Q |
131 |
gatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaata |
189 |
Q |
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||||||||||||||||| ||||| ||||| ||||||||||||||| | | ||||||||| |
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| T |
46434457 |
gatggtttctatgatcactggtctatgttaatggagaatcttcttcgttccaaagaata |
46434399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 10784805 - 10784723
Alignment:
| Q |
128 |
ttcgatggtttctatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaatattggaaacttattgaacatgg |
210 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| ||||| || | | |||||| |||||| | || ||||||||||| |
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| T |
10784805 |
ttcgatggtttctatgatcattggtctatgttaatggaaaatctctttcgttccaaagagtattggcacctgattgaacatgg |
10784723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 5875289 - 5875359
Alignment:
| Q |
140 |
tatgatcattggtcaatgttgatggagaatcttctttgctgcaaagaatattggaaacttattgaacatgg |
210 |
Q |
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|||||||||||| |||||||||||| ||| ||||| ||| |||||||||||||| || |||||| |||| |
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| T |
5875289 |
tatgatcattggaaaatgttgatggaaaattttcttcgctcgaaagaatattggaatctcattgaaaatgg |
5875359 |
T |
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