View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119R-Insertion-21 (Length: 205)

Name: NF3119R-Insertion-21
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119R-Insertion-21
NF3119R-Insertion-21
[»] scaffold0543 (1 HSPs)
scaffold0543 (8-205)||(476-673)
[»] scaffold0754 (1 HSPs)
scaffold0754 (7-205)||(3213-3411)
[»] scaffold0563 (7 HSPs)
scaffold0563 (7-205)||(64-262)
scaffold0563 (7-205)||(9746-9944)
scaffold0563 (8-205)||(5619-5816)
scaffold0563 (8-205)||(8708-8905)
scaffold0563 (8-205)||(6881-7078)
scaffold0563 (8-205)||(3856-4053)
scaffold0563 (8-205)||(2022-2226)
[»] scaffold0492 (2 HSPs)
scaffold0492 (7-205)||(106-304)
scaffold0492 (8-205)||(2022-2219)
[»] chr1 (4 HSPs)
chr1 (7-205)||(15830511-15830709)
chr1 (7-205)||(15833966-15834164)
chr1 (7-205)||(15832239-15832437)
chr1 (11-200)||(15829430-15829616)


Alignment Details
Target: scaffold0543 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 476 - 673
Alignment:
Q  8 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  476 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaa 575  T
Q  108 gcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  576 gcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacatagttaatgaaatcaattgaatagtaaa 673  T

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Target: scaffold0754 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 3411 - 3213
Alignment:
Q  7 cacttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaa 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3411 cacttccatcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaa 3312  T
Q  107 agcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3311 agcaatgccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa 3213  T

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Target: scaffold0563 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 262 - 64
Alignment:
Q  7 cacttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaa 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  262 cacttccatcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaa 163  T
Q  107 agcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  162 agcaatgccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa 64  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 9944 - 9746
Alignment:
Q  7 cacttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaa 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9944 cacttccatcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaa 9845  T
Q  107 agcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9844 agcaatgccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa 9746  T

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Target: scaffold0563; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 5619 - 5816
Alignment:
Q  8 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5619 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaa 5718  T
Q  108 gcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    | ||| |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5719 ggaataccatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa 5816  T

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Target: scaffold0563; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 8905 - 8708
Alignment:
Q  8 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8905 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaa 8806  T
Q  108 gcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    | ||| |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8805 ggaataccatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa 8708  T

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Target: scaffold0563; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 7078 - 6881
Alignment:
Q  8 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaa 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  7078 acttccatcatcataccataattgagtttcataagataaaccataacaactctcattctttgacaatgttccagagctaagtgtgtgtaagacatggaaa 6979  T
Q  108 gcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    | ||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  6978 ggaataccatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttattgaaatcaattgaatagtaaa 6881  T

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Target: scaffold0563; HSP #6
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 3856 - 4053
Alignment:
Q  8 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaa 107  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  3856 actttcatcatcataccataattgagtttcataagataaaccataacaactctcattctttgacaatgttccagagctaagtgtgtgtaagacatggaaa 3955  T
Q  108 gcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    | ||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  3956 ggaataccatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttattgaaatcaattgaatagtaaa 4053  T

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Target: scaffold0563; HSP #7
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 2022 - 2226
Alignment:
Q  8 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2022 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaa 2121  T
Q  108 gcaatgccatctgcc-------aaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaata 200  Q
    | ||| |||||| ||       ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2122 ggaataccatctcccaaaggaaaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaata 2221  T
Q  201 ctaaa 205  Q
     ||||    
T  2222 gtaaa 2226  T

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Target: scaffold0492 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 304 - 106
Alignment:
Q  7 cacttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaa 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  304 cacttccatcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaa 205  T
Q  107 agcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  204 agcaatgccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa 106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 2022 - 2219
Alignment:
Q  8 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2022 acttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaa 2121  T
Q  108 gcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    | ||| |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2122 ggaataccatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa 2219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 15830511 - 15830709
Alignment:
Q  7 cacttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaa 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15830511 cacttccatcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaa 15830610  T
Q  107 agcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15830611 agcaatgccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa 15830709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 15833966 - 15834164
Alignment:
Q  7 cacttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaa 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15833966 cacttccatcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaa 15834065  T
Q  107 agcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15834066 agcaatgccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa 15834164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 15832239 - 15832437
Alignment:
Q  7 cacttccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaa 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15832239 cacttccatcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaa 15832338  T
Q  107 agcaatgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaatactaaa 205  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  15832339 agcaatgccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaagtgaatagtaaa 15832437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 15829430 - 15829616
Alignment:
Q  11 tccatcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagca 110  Q
    |||||||||||||| |||||||||||||||||||||| |||||||   ||||||||||||||| ||||||||||||||||| |||||||||||| |||||    
T  15829430 tccatcatcataccataattgagtttcataagataaaacataaca---ctcattctttgacaaagttccagagctaagtttatgtaagacatggcaagca 15829526  T
Q  111 atgccatctgccaaaggaaaaacaggtacatcaaaaatagaataaatctttatgatacataaatacattgttaatgaaatcaattgaata 200  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||    
T  15829527 atgccatctgccaaaggaaagacaggtacatcaaaaatagaagaaatgtttttgatacataaatacattgttaatggaatcaattgaata 15829616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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