View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119R-Insertion-5 (Length: 841)
Name: NF3119R-Insertion-5
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119R-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 814; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 8 - 841
Target Start/End: Complemental strand, 12886757 - 12885924
Alignment:
| Q |
8 |
aaaaatgcacttagtttttacttactgcatcaaagctaactctatctatatatgacagtaagaaaactgactctagcaaattctagttctagttcccaat |
107 |
Q |
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| T |
12886757 |
aaaaatacacttagtttttacttactgcatcaaagctaactctatctatatatgacagtaagaaaactgactctagcaaattctagttctagttcccaat |
12886658 |
T |
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| Q |
108 |
aaccatataacttcccaaattaaattacctcaaaactcgtactaagctaccaaaaacaaagaaactaccagtttacagagatagctaccaggaatccata |
207 |
Q |
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| T |
12886657 |
aaccatataacttcccaaattaaattacctcaaaactcgtactaagctaccaaaaacaaagaaactaccagtttacagagatagctaccaggaatccata |
12886558 |
T |
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| Q |
208 |
aaatatcccatgccccaaaattttggagcaatgagaaattcacagatataacattcccaattaatgtctcattattacagcaaatttgcagactttattg |
307 |
Q |
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| T |
12886557 |
aaatatcccatgccccaaaattttggaggaatgagaaattcacagatataacattcccaattaatgtctcattattacagcaaatttgcagactttattg |
12886458 |
T |
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| Q |
308 |
aacatccccgactttagaggacaatgccattcgaagctgctcctgagtgtaaaaacgactccccattttcacggttgcttgttgtatcatcaaatcattt |
407 |
Q |
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| T |
12886457 |
aacatccccgactttagaggacaatgccgctcgaagctgctcctgagtgtaaaaacgactccccattttcacggttgcttgttgtatcatcaaatcattt |
12886358 |
T |
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| Q |
408 |
accacagacacactggcatggtgcacttctaggtcaagctccattaacgctgccattaacctcgctgcagggtggtttttcttactgcattggaccctta |
507 |
Q |
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| T |
12886357 |
accacagacacactggcatggtgcacttctaggtcaagctccattaacgctgccattaacctcgctgcagggtggtttttcttactgcattggaccctta |
12886258 |
T |
|
| Q |
508 |
tcattgcatcccaacctataatcttcacgtcgatatctaaatcgattagagcttgattcgaagagggtttattcggtattggctgttgttgctgctgctg |
607 |
Q |
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| T |
12886257 |
tcattgcatcccaacctataatcttcacgtcgatatctaaatcgattagagcttgattcgaagagggtttattcggtattggctgttgttgttgctgctg |
12886158 |
T |
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| Q |
608 |
ttgtggtggctgatgagactggttttcgttgattttctgaatttcattcttcatcccatcaagttgcttttctaatccatctttatcagattcagttttc |
707 |
Q |
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| T |
12886157 |
ttgtggtggctgatgagactggttttcgttgattttctgaatttcattcttcatcccatcaagttgcttttctaatccatctttatcagattcagttttc |
12886058 |
T |
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| Q |
708 |
tgaagctttgttttcaactcagtaatgtaagatatagcatcacccaaaagtgaagctttgtccatctttgaaacattaggaacaaccgctcgaagtgcat |
807 |
Q |
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| T |
12886057 |
tgaagctttgttttcaactcagtaatgtaagatatagcatcacccaaaagtgaagctttgtccatctttgaaacattaggaacaaccgctcgaagtgcat |
12885958 |
T |
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| Q |
808 |
agaatctctgattcagcttctctcttctttgcct |
841 |
Q |
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| T |
12885957 |
agaatctctgattcagcttctctcttctttgcct |
12885924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 544
Target Start/End: Complemental strand, 28081595 - 28081435
Alignment:
| Q |
384 |
gcttgttgtatcatcaaatcatttaccacagacacactggcatggtgcacttctaggtcaagctccattaacgctgccattaacctcgctgcagggtggt |
483 |
Q |
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| T |
28081595 |
gcttgttgaatcatcaaatcattcacaacagacacactagcatgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgat |
28081496 |
T |
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| Q |
484 |
ttttcttactgcattggacccttatcattgcatcccaacctataatcttcacgtcgatatc |
544 |
Q |
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| T |
28081495 |
tcttcttgctgcattgaatcctaatcatagcatcccaacccataatcttcacatcaatatc |
28081435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 838
Target Start/End: Complemental strand, 28081244 - 28081141
Alignment:
| Q |
735 |
taagatatagcatcacccaaaagtgaagctttgtccatctttgaaacattaggaacaaccgctcgaagtgcatagaatctctgattcagcttctctcttc |
834 |
Q |
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| T |
28081244 |
taagatatagcatcgcctagcagcgatgctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagcttttctcttc |
28081145 |
T |
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| Q |
835 |
tttg |
838 |
Q |
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|||| |
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| T |
28081144 |
tttg |
28081141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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