View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119R-Insertion-6 (Length: 835)
Name: NF3119R-Insertion-6
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119R-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 335 - 768
Target Start/End: Complemental strand, 54040294 - 54039875
Alignment:
| Q |
335 |
tagtcctgatttattaraaatagaaatcttgatttatttatgtctttttgggttttaaagaatgtgaaaatttatgttgcagacggtataataataaaat |
434 |
Q |
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| T |
54040294 |
tagtcctgatttattagaaatagaaatcttgatttatttatgtctttttgggttttaaagaatgtgaaaatttatgttgcagacggtataataataaaat |
54040195 |
T |
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| Q |
435 |
tgtgctttagta---ttgaatagaaaggataattttataactcttctttcttttgattttgtcgttgtttctgaaaagtggacttttaaattggatatct |
531 |
Q |
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| T |
54040194 |
tgtgctttagtactattgaatagaaaagataattttataacttttttttcttctgattttgtcgttgtttctgaaaagtggacttttaaattggatatct |
54040095 |
T |
|
| Q |
532 |
gggctgtcatggtttcttgctgaaaagtgtgcactttttaatgcattcttgtgtttgtaaaggattaaataaattaaatttaaaagatagtaatatttta |
631 |
Q |
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| T |
54040094 |
ggg-------------ttgctgaaaagtgtgcactttttaatgcattcttgtgtttgtataggattaaataaattaaatttaaaagata---atatttta |
54040011 |
T |
|
| Q |
632 |
taacttttttctgattttgtcaaggttctttctgaaaagtggacttttaaattggatatttctgggtagtcatggttcttactgaaaaagtgtggacttt |
731 |
Q |
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| T |
54040010 |
taacttttttctgattttgtcaaggttctttctgaaaagtggacttttaaattggatatt-ctgggtagtcatggttcttactgaaaaagtgtggacttc |
54039912 |
T |
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| Q |
732 |
taaactgagattgcttttcatcttaaaagtgttctta |
768 |
Q |
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| T |
54039911 |
taaactgagattgcttttcatcttaaaagtgttctta |
54039875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 54040585 - 54040284
Alignment:
| Q |
9 |
gtttgcaatctggaaaagtttgcattgactttcattcccaatttctcaatgatactgctgataaattctacctccagcacttgaatgctcttcaggttag |
108 |
Q |
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| T |
54040585 |
gtttgcaatctggaaaactttgcattgactttcattcccaatttctcaatgatactgctgataaattctacctccagcacttgaatgctcttcaggttag |
54040486 |
T |
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| Q |
109 |
tttctttttatctttgtttattcaatttatgttcttgatgttgttttatttgctgggttattataaaaattcgaacttgcatgtgatttatgtttggggt |
208 |
Q |
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| T |
54040485 |
tttctttttatctttctttattcaatttatgtt---------gttttatttgctgggttattatcaaaattcgaacttgcatgtgatttatgtttggggt |
54040395 |
T |
|
| Q |
209 |
tttatgttcttgatgttgattgcttttctgagttgaaattttgtgtatgattgatcgtgttcatcataaaaaattagggttgaaaaaagttgaatttaac |
308 |
Q |
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| T |
54040394 |
tttatgttcttgatgttgattgcttttctgagttgaaattttgtgtatcattgatcgtgttcatcataaaaaattagggttgaaaaaagttgaatttaac |
54040295 |
T |
|
| Q |
309 |
cagtcctgatt |
319 |
Q |
| |
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|||||||||| |
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| T |
54040294 |
tagtcctgatt |
54040284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 3484489 - 3484541
Alignment:
| Q |
9 |
gtttgcaatctggaaaagtttgcattgactttcattcccaatttctcaatgata |
62 |
Q |
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||||||||| |||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
3484489 |
gtttgcaat-tggacaagtttgctttgaatttcattcccaatttctcaatgata |
3484541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 41779254 - 41779202
Alignment:
| Q |
9 |
gtttgcaatctggaaaagtttgcattgactttcattcccaatttctcaatgata |
62 |
Q |
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||||||||| |||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
41779254 |
gtttgcaat-tggacaagtttgctttgaatttcattcccaatttctcaatgata |
41779202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 3276697 - 3276645
Alignment:
| Q |
9 |
gtttgcaatctggaaaagtttgcattgactttcattcccaatttctcaatgata |
62 |
Q |
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||||||||| |||| |||||||| |||| |||||||||||||||| |||||||| |
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| T |
3276697 |
gtttgcaat-tggataagtttgctttgaatttcattcccaatttcacaatgata |
3276645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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