View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119R-Insertion-7 (Length: 811)
Name: NF3119R-Insertion-7
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119R-Insertion-7 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 527; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 151 - 811
Target Start/End: Original strand, 32371530 - 32372185
Alignment:
| Q |
151 |
atgtctagagactaagattgtgattatcaatcactagaagctggataatatcgttcactagaaggnnnnnnnnnnngaatctagtttgtgaggtactctt |
250 |
Q |
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| T |
32371530 |
atgtcaagagactaagattgtgattatcgatcactagaagctggataatatcgatcactagaaggaaaaaaaa----aatctagtttgtgaggtactctt |
32371625 |
T |
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| Q |
251 |
tacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattc |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32371626 |
tacacaaattgactggccttttatgcatcaaaaa-tgttagcttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattc |
32371724 |
T |
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| Q |
351 |
atgaataaataaatactgtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaaccca |
450 |
Q |
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| T |
32371725 |
atgaataaataaatactgtttggaattgtatttatatcatggttaaaaagcttgcaagtcagcttgtagacttggccaagtttacgagcccagcaaccca |
32371824 |
T |
|
| Q |
451 |
tacaagttggctcgccaacataatcgttttctggacagatgcgagaaaagctcacgattatggagttcgaannnnnnnctaaaaaagcccaaatcgcagt |
550 |
Q |
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||||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32371825 |
tacaagttggctcacgaacatattcgttttctggacagatgcgagaaaaactcacgattatggagttcgaatttttttctaaaaaagcccaaatcgcagt |
32371924 |
T |
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| Q |
551 |
accgcctcacagtttattgaattctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctcttaaatctctgtgtgatactgttgct |
650 |
Q |
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| T |
32371925 |
accgcctcacagtttattgaattctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctcttacatctctgtgtgacactgttgct |
32372024 |
T |
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| Q |
651 |
ttgtgtcatctctggctttcgtctcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggtttgtggtcctcttctcttttttc |
750 |
Q |
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| T |
32372025 |
ttgtgtcatctctggctttcgtctcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggtttgtggtcctcttctcttttttc |
32372124 |
T |
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| Q |
751 |
gtttgtctggtttgcaatgctttgtccagtctgatatgttcctcttttctattttgtctgg |
811 |
Q |
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| T |
32372125 |
gtttgtctggtttgcaatgctttgtccagtctgatgtgttcctcttttctattttgcctgg |
32372185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 236 - 478
Target Start/End: Complemental strand, 32365224 - 32364989
Alignment:
| Q |
236 |
ttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttg |
335 |
Q |
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| T |
32365224 |
ttgtgaggcactctttacacaaattgactggccttttatgcattaaaaaatgttaccttttatgctttcaaag-----actatgccctattttcaccttg |
32365130 |
T |
|
| Q |
336 |
gaattgctgcaattcatgaataaataaatact--gtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagttt |
433 |
Q |
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||||||| ||||||||||||| |||||||| || |||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||| |
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| T |
32365129 |
gaattgc---aattcatgaataa-taaatactctgtctggaattgtatttatatcatggttagcaaactcgcaagtcagctcgtagagttggccaagttt |
32365034 |
T |
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| Q |
434 |
acgagcccagcaacccatacaagttggctcgccaacataatcgtt |
478 |
Q |
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| T |
32365033 |
acgagtccagctacccatacaagttgactcgcgaacataatcgtt |
32364989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 32357047 - 32357192
Alignment:
| Q |
56 |
aaaggaagtgttgtaacattgtgagattgtttaatattctcaatttattatgtcaaatagccttgagtgggtcagcttatttt-ttcctccaaaacatgt |
154 |
Q |
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| T |
32357047 |
aaaggaagtgttgtaacattgtgagatggttcaatattcacaatttatgatgtcaaataaccttgagtgg-tcaggttatttttttcctccaaaacatgt |
32357145 |
T |
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| Q |
155 |
ctagagactaagattgtgattatcaatcactagaagctggataatat |
201 |
Q |
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| T |
32357146 |
ctagaaactaagattgtgactatctatcactagaagctggataatat |
32357192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 32371429 - 32371536
Alignment:
| Q |
10 |
atatctaggtcagaaggcaacaaccttagtattatagtgaggctc------gaaaggaagtgttgtaacattgtgagattgtttaatattctcaatttat |
103 |
Q |
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| T |
32371429 |
atatctaggtcagaaggcaacaaccttagtattatactgaggctctccctcgaaaggaagtgttgtaacattgtgagattgtttaatattcacaatttat |
32371528 |
T |
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| Q |
104 |
tatgtcaa |
111 |
Q |
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| T |
32371529 |
tatgtcaa |
32371536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 381
Target Start/End: Original strand, 32357335 - 32357484
Alignment:
| Q |
231 |
ctagtttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttca |
330 |
Q |
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||||||||||| ||| ||||||||| || ||||||||||||||||||| | | || ||||||||||||| |||| |||| |||||| |||| |||||| |
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| T |
32357335 |
ctagtttgtgaagtattctttacaccaactgactggccttttatgcattagagaagtttaggttttatgccttcaccggcagaactcttccttcttttca |
32357434 |
T |
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| Q |
331 |
ccttggaattgctgcaattcatgaataaataaata--ctgtttggaattgtat |
381 |
Q |
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| T |
32357435 |
tcccagaat---tgcaattcatgaataaagaaatactctgtttgtaattgtat |
32357484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 32364939 - 32364860
Alignment:
| Q |
111 |
aatagccttgagtgggtcagcttattttttcctccaaaacatgtctagagactaagattgtgattatcaatcactagaagct |
192 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||| ||||||| | ||||||| | | |||| ||||||||||||| |
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| T |
32364939 |
aataaccttgagtgggtcaggttattttttcctccaaaac--gtctagaaattaagattctaactatctatcactagaagct |
32364860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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