View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119R-Insertion-8 (Length: 667)

Name: NF3119R-Insertion-8
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119R-Insertion-8
NF3119R-Insertion-8
[»] chr1 (5 HSPs)
chr1 (96-667)||(36251236-36251807)
chr1 (597-667)||(36225800-36225870)
chr1 (121-160)||(48317605-48317644)
chr1 (597-667)||(36235034-36235104)
chr1 (117-169)||(28524492-28524544)
[»] chr3 (3 HSPs)
chr3 (601-667)||(367131-367199)
chr3 (117-160)||(47542543-47542586)
chr3 (120-160)||(49636837-49636877)
[»] chr8 (1 HSPs)
chr8 (117-160)||(3066050-3066093)
[»] chr4 (4 HSPs)
chr4 (121-160)||(31277036-31277075)
chr4 (117-161)||(2796553-2796597)
chr4 (128-168)||(38108077-38108117)
chr4 (128-168)||(38117701-38117741)
[»] chr5 (1 HSPs)
chr5 (117-158)||(28322251-28322292)


Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 96 - 667
Target Start/End: Original strand, 36251236 - 36251807
Alignment:
Q  96 tctcaacaccgacacacacatacacatgttattacattctattagttcattttctcaaattattaaagatgtcgattttgtgtctgtgttctatttgggg 195  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  36251236 tctcaacacctacacacacatacacatgttattacattctattagttcattttctcaaattattaaagatgtcaattttgtgtccgtgttctatttgggg 36251335  T
Q  196 tcggtgctgcatagaatcttacatgtttgacagataagtcggcattttatttatcttgctaaatcaaaatattaatgccatcatctactatctgctgtct 295  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36251336 tcggtgctgcatagaatcttacatgtttgacatataagtcggcattttatttatcttgctaaatcaaaatattaatgccatcatctactatctgctgtct 36251435  T
Q  296 atgacagatttggatctcgatatctgagagtctttgaaattaccattgaaggataaattgacaagttttatagacttcttataggaaattgcatttggtt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36251436 atgacagatttggatctcgatatctgagagtctttgaaattaccattgaaggataaattgacaagttttatagacttcttataggaaattgcatttggtt 36251535  T
Q  396 ggtaaacgcataaagcttttgtatcacacactatatacatttgcttattctacatgtttgagggctctaattaggcttatatcagaagccataattattt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36251536 ggtaaacgcataaagcttttgtatcacacactatatacatttgcttattctacatgtttgagggctctaattaggcttatatcagaagccataattattt 36251635  T
Q  496 tttctaaaccatgtctattttctacnnnnnnnggtaagcttctacttattttcttcaatgcacgtaattgattacctcctgctattctaattggaaatcc 595  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36251636 tttctaaaccatgtctattttctactttttttggtaagcttctacttattttcttcaatgcacataattgattacctcctgctattctaattggaaatcc 36251735  T
Q  596 tctgcaggcttgtcaaaagctggatcaaatttaccttaccgactgtgaaatctatgcttcttgtgaaccttg 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36251736 tctgcaggcttgtcaaaagctggatcaaatttaccttaccgactgtgaaatctatgcttcttgtgaaccttg 36251807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 667
Target Start/End: Complemental strand, 36225870 - 36225800
Alignment:
Q  597 ctgcaggcttgtcaaaagctggatcaaatttaccttaccgactgtgaaatctatgcttcttgtgaaccttg 667  Q
    |||||||||||||||| |||||||| ||||| |||  | ||||||||| | ||||||||||||||||||||    
T  36225870 ctgcaggcttgtcaaacgctggatcgaatttccctagctgactgtgaactatatgcttcttgtgaaccttg 36225800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 48317644 - 48317605
Alignment:
Q  121 atgttattacattctattagttcattttctcaaattatta 160  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  48317644 atgttattacattcaattatttcattttctcaaattatta 48317605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 667
Target Start/End: Original strand, 36235034 - 36235104
Alignment:
Q  597 ctgcaggcttgtcaaaagctggatcaaatttaccttaccgactgtgaaatctatgcttcttgtgaaccttg 667  Q
    |||||||||||| ||||||||||| || |||  ||| | | ||||||| ||||| ||||||||||||||||    
T  36235034 ctgcaggcttgtaaaaagctggataaagtttcacttgctggctgtgaactctatacttcttgtgaaccttg 36235104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 28524492 - 28524544
Alignment:
Q  117 acacatgttattacattctattagttcattttctcaaattattaaagatgtcg 169  Q
    |||||||| |||||||||||| | |||||||| |||||||||||  |||||||    
T  28524492 acacatgtgattacattctatcatttcattttttcaaattattactgatgtcg 28524544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 601 - 667
Target Start/End: Complemental strand, 367199 - 367131
Alignment:
Q  601 aggcttgtcaaaagctggatcaaatttaccttaccgactgtgaaatc--tatgcttcttgtgaaccttg 667  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  367199 aggcttgtcaaaagctggatcaaatttaccttaccgactgtggaatctatatgcttcttgtgaaccttg 367131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 47542586 - 47542543
Alignment:
Q  117 acacatgttattacattctattagttcattttctcaaattatta 160  Q
    |||||||| ||||||||| | |||||||||||||||||||||||    
T  47542586 acacatgtgattacattcaaatagttcattttctcaaattatta 47542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 49636837 - 49636877
Alignment:
Q  120 catgttattacattctattagttcattttctcaaattatta 160  Q
    ||||| ||||||||| |||| ||||||||||||||||||||    
T  49636837 catgtgattacattcaattaattcattttctcaaattatta 49636877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 3066093 - 3066050
Alignment:
Q  117 acacatgttattacattctattagttcattttctcaaattatta 160  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  3066093 acacatgttattacattcaattaatccattttctcaaattatta 3066050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 31277036 - 31277075
Alignment:
Q  121 atgttattacattctattagttcattttctcaaattatta 160  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  31277036 atgtgattacattcaattagttcattttctcaaattatta 31277075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 2796597 - 2796553
Alignment:
Q  117 acacatgttattacattctattagttcattttctcaaattattaa 161  Q
    |||||||| |||| |||| |||| |||||||||||||||||||||    
T  2796597 acacatgtgattaaattcaattaattcattttctcaaattattaa 2796553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 38108117 - 38108077
Alignment:
Q  128 tacattctattagttcattttctcaaattattaaagatgtc 168  Q
    ||||||| ||||||| ||||||||||||||||| |||||||    
T  38108117 tacattcaattagtttattttctcaaattattacagatgtc 38108077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 38117741 - 38117701
Alignment:
Q  128 tacattctattagttcattttctcaaattattaaagatgtc 168  Q
    ||||||| ||||||| ||||||||||||||||| |||||||    
T  38117741 tacattcaattagtttattttctcaaattattacagatgtc 38117701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 28322292 - 28322251
Alignment:
Q  117 acacatgttattacattctattagttcattttctcaaattat 158  Q
    |||||||| ||||||||| |||| ||||||||||||||||||    
T  28322292 acacatgtgattacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University