View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119R-Insertion-9 (Length: 635)
Name: NF3119R-Insertion-9
Description: NF3119R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119R-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 32 - 635
Target Start/End: Complemental strand, 39883555 - 39882948
Alignment:
| Q |
32 |
agtcgagcttccgttgctcgtaaaatatgatccatctatattaagtttgaatcgcccaggaggatggacttaattaa----ttgatgtgcattattgatt |
127 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
39883555 |
agtcgagcttccgttactcgtaaaatatgatccatctatattaagtttgaatcgcccaagaggatggacttaattatgcttttgatgtgcattattgatt |
39883456 |
T |
|
| Q |
128 |
ccctagatgccttgggcgcttgcaattttgttataatattatgacgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaat |
227 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39883455 |
ccctagatgccttgggcgcttgcaattttgttacaatatcatgacgtgattgttaaccgaactccatagtttatctcccatatatgactgatgagaaaat |
39883356 |
T |
|
| Q |
228 |
atgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttcc |
327 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
39883355 |
atgagcatgttcatgtccttccaaagagtccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccttgcacgtcaagttcc |
39883256 |
T |
|
| Q |
328 |
atttaatccaaacaaaaagttcgagaccaaagaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctcatg |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39883255 |
atttaatccaaacaaaaagttcgagaccaaagaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctcata |
39883156 |
T |
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| Q |
428 |
catcacaagctttatgtttcattgatatagaccaatcacgatatattaacataaagcttgtagcagcttcaaactactttgaagttgaagaacgtcctgg |
527 |
Q |
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| T |
39883155 |
catcacaagctttatgtttcattgatatagaccaatcacgatatattaacataaagcttgtagcagcttcaaactactttgaagttgaagaacgtcctgg |
39883056 |
T |
|
| Q |
528 |
tataaaactaccttcatgttgtgagaccacataaggcatgatattccttattctataagccaagatttttcaaattattttatagctcgcgttacataaa |
627 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
39883055 |
tataaaactacttgcatgttgtgagaccacataaggcatgatattccttattctataagccaagattttttaaattattttatagctcacgttacataaa |
39882956 |
T |
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| Q |
628 |
gcaatggg |
635 |
Q |
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|||||||| |
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| T |
39882955 |
gcaatggg |
39882948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 38250547 - 38250609
Alignment:
| Q |
37 |
agcttccgttgctcgtaaaatatgatccatctatattaagtttgaatcgcccaggaggatgga |
99 |
Q |
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| T |
38250547 |
agcttccgacgctggtaaaatatgatccatctacattgagtttgagtcgtccaagaggatgga |
38250609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 424
Target Start/End: Original strand, 40645364 - 40645543
Alignment:
| Q |
243 |
tccttccaaagaatccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaa |
342 |
Q |
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|||||| ||||| ||||||||| |||||||| || ||| ||||||| |||| || |||| || | ||| | ||| | |||||||||| ||||||||||| |
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| T |
40645364 |
tccttcgaaagatcccacaccatgactccaaagaaaatataccaatcccaag-taaattatcattctccttacacgttaagttccattcaatccaaacaa |
40645462 |
T |
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| Q |
343 |
aaagttcgagaccaaagaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctc |
424 |
Q |
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| T |
40645463 |
aaagatcgagcctggagaactaactccaatattcttcttttatgaccct-tgaccaaagctccttagtgtcctcacaatctc |
40645543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 36826512 - 36826426
Alignment:
| Q |
260 |
caccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaaaaag |
346 |
Q |
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| T |
36826512 |
caccataactccaaagaagatagaacaatctcaagttacattaccaatgtccttacacgtcaagttctattcaatccaagcaaaaag |
36826426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 42874702 - 42874636
Alignment:
| Q |
171 |
acgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaatatgagcatgt |
237 |
Q |
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| T |
42874702 |
acgttattgttaactgaattccatagtttatcttccatatttgaccaataagaaaatatgagcatgt |
42874636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 42874808 - 42874750
Alignment:
| Q |
26 |
accataagtcgagcttccgttgctcgtaaaatatgatccatctatattaagtttgaatc |
84 |
Q |
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| T |
42874808 |
accataagccgagctttcattgcttgtaaaatatgatccatctaaattgagttcgaatc |
42874750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 24352009 - 24352080
Alignment:
| Q |
216 |
tgatgagaaaatatgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaa |
287 |
Q |
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|||||||||||||||| ||||||| | || ||| |||||| ||||||||||||| |||| || ||||||||| |
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| T |
24352009 |
tgatgagaaaatatgaacatgttcctatcattctaaagaacccacaccataacttcaaagaagatagaccaa |
24352080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 42502497 - 42502625
Alignment:
| Q |
217 |
gatgagaaaatatgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgca |
316 |
Q |
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||||||||||||||||||| || || |||||||||| || |||||||| ||||| || || ||| |||||| ||||||| |||| |||| | | || |
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| T |
42502497 |
gatgagaaaatatgagcatatttatatccttccaaacaacccacaccaaaactctgaagaagataaaccaattccaaggtagattaccaatgtaattaca |
42502596 |
T |
|
| Q |
317 |
cttcaagttccatttaatccaaacaaaaa |
345 |
Q |
| |
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| T |
42502597 |
cgtcaagttccattcaatttaaacaaaaa |
42502625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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