View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119_high_11 (Length: 386)

Name: NF3119_high_11
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119_high_11
NF3119_high_11
[»] chr5 (16 HSPs)
chr5 (7-371)||(11049829-11050193)
chr5 (28-372)||(10609619-10609963)
chr5 (7-263)||(10718963-10719219)
chr5 (7-338)||(10765105-10765436)
chr5 (10-338)||(10562918-10563246)
chr5 (7-333)||(10749010-10749336)
chr5 (8-339)||(10742691-10743022)
chr5 (8-115)||(7190891-7190998)
chr5 (7-86)||(19608107-19608186)
chr5 (7-105)||(9838551-9838649)
chr5 (8-105)||(10602642-10602739)
chr5 (220-313)||(10548894-10548987)
chr5 (22-115)||(10662298-10662391)
chr5 (8-104)||(10590651-10590747)
chr5 (9-104)||(10578897-10578992)
chr5 (7-52)||(10598977-10599022)
[»] chr6 (10 HSPs)
chr6 (151-333)||(12930308-12930490)
chr6 (151-333)||(12956110-12956292)
chr6 (151-333)||(12905218-12905400)
chr6 (151-311)||(12946673-12946833)
chr6 (151-336)||(12897597-12897782)
chr6 (7-111)||(12897453-12897557)
chr6 (7-111)||(12905074-12905178)
chr6 (10-111)||(12955969-12956070)
chr6 (7-111)||(12930164-12930268)
chr6 (7-111)||(12946529-12946633)
[»] chr2 (2 HSPs)
chr2 (151-333)||(17925401-17925583)
chr2 (7-115)||(17925619-17925727)
[»] chr3 (1 HSPs)
chr3 (27-137)||(31469350-31469460)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 11050193 - 11049829
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctca 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  11050193 catggaatcacatgcagcctcatgcatcaaagagttacaaagttgaacctagaaggatatcagttgcatggatcaatatcaccctatgttggcaatctca 11050094  T
Q  107 cttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaa 206  Q
    |||||||||| |||||||||||||||||||| || ||  |||| ||||||||||| |||||||||  |||| |||||||| ||||||||||||| |||||    
T  11050093 cttttttgacagaattcaatctcatgaacaacagcttctatggagaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaa 11049994  T
Q  207 taactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaatt 306  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||| || ||||||| |    
T  11049993 taactctcttgcaggagaaattcctacaaacctcacacattgctccaatcttaaagacttgtatttgggagggaacaatttaattggcaagataccaaat 11049894  T
Q  307 gaaattgcctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaat 371  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  11049893 gaaattggctctttgaaaaaacttcaatcattggccatttggaaaaataaattaactggaggaat 11049829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 28 - 372
Target Start/End: Original strand, 10609619 - 10609963
Alignment:
Q  28 atgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaatc 127  Q
    ||||| |||||||||| | |||||||||| |||||||| || ||||||||||| |||||||| ||||| |||||||| |||||| | ||    || ||||    
T  10609619 atgcaacaaagagttatagagttgaaccttgaaggatatcagttgcatggatccatatcaccatatgtaggcaatcttacttttcttacaaccttgaatc 10609718  T
Q  128 tcatgaacaatagatttcatggtgaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaat 227  Q
    |||||||||| || ||  ||||   ||| || |||||||||||| ||||| ||||||||||||||||||  || | |||||||||| ||| |||||||||    
T  10609719 tcatgaacaacagcttctatggaacaatcccgcaggagttgggtcagttgctacaattgcaacaactttatctcatcaataactcttttgcaggagaaat 10609818  T
Q  228 tcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaa 327  Q
    |||||||||||| ||| ||||||||||||||||||| ||   ||||||||| |||||||| | ||| |||||||| |||||||||| ||| ||||||||     
T  10609819 tcctacaaacctgacacattgctccaatctcaaagagttacgtttgggaggaaacaatttgattggcaaaataccgattgaaattggctctttgaaaaag 10609918  T
Q  328 cttcaatcattgcccatttggaaaaataaattaaccggaggaatt 372  Q
    |||||||   || ||||||||||||| ||||||||||||||||||    
T  10609919 cttcaatatgtgaccatttggaaaaacaaattaaccggaggaatt 10609963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 10719219 - 10718963
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctca 106  Q
    ||||||||||||||||| | ||||||| ||||||||||| |||||||||||| |||||| |  || ||||||||  |||| ||| ||||||||||||||     
T  10719219 catggaatcacatgcagccccatgcatgaaagagttacagagttgaacctaggaggatatctgttacatggatctttatctccccatgttggcaatctct 10719120  T
Q  107 cttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaa 206  Q
    | |||||||   |  ||||||| || ||||| || ||   ||| ||||||||||| |||||||| |||||| ||||||||||||||||||  |||| |||    
T  10719119 cctttttgataaacctcaatcttataaacaacagcttctttggagaaattccacatgagttgggcaagttgctacaattgcaacaactttatcttaacaa 10719020  T
Q  207 taactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaaga 263  Q
    ||||||| ||| |||  |||||||||||||||| || ||||||||||||||||||||    
T  10719019 taactcttttgcaggtaaaattcctacaaacctgacgtattgctccaatctcaaaga 10718963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 338
Target Start/End: Complemental strand, 10765436 - 10765105
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctca 106  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||| || || ||||||||  |||| |||||| |||| |||||||    
T  10765436 catggaatcacatgcagcctcatgcatcaaagggttacagagttgaacctagcaggatatcagttacatggatctttatctccctatcttggtaatctca 10765337  T
Q  107 cttttttgactgaat-tcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagca 205  Q
    ||||| ||| | ||| |||| ||    |||||||| |||  ||| ||||||||||||||||| ||| ||||| ||||| ||||||||||||  ||    |    
T  10765336 cttttctga-taaatctcaaccttcaaaacaatagtttttctggagaaattccacaggagttcggtcagttgctacaactgcaacaactttatctcctta 10765238  T
Q  206 ataactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaat 305  Q
    |||||||  ||  |||||||||||||| |||| | || |||||||||||||||| ||| |||  ||||||||||||||| || |  || ||||||| |||    
T  10765237 ataactcgtttacaggagaaattcctataaacttgacgtattgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaat 10765138  T
Q  306 tgaaattgcctcgttgaaaaaacttcaatcatt 338  Q
    |||||||| ||| |||||||| ||||| |||||    
T  10765137 tgaaattggctctttgaaaaaccttcattcatt 10765105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 10562918 - 10563246
Alignment:
Q  10 ggaatcacatgcagtctcatgcatcaaagagttacaaagttgaaccta-gaaggataacaattgcatggatcaatatcaccctatgttggcaatctcact 108  Q
    |||||||| ||||  | ||||||||||||||||| | ||||||||||| |||| | | || || ||||||||  |||| ||||||||||||||||||||     
T  10562918 ggaatcacttgcaaccccatgcatcaaagagttatagagttgaacctaagaagta-atcacttacatggatctttatctccctatgttggcaatctcacc 10563016  T
Q  109 tttttgactgaat-tcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaat 207  Q
    ||||||| | ||| || | ||    |||||||| |||  ||| ||||| |||| |||||||||| ||||| ||||| ||||||| ||||  ||    |||    
T  10563017 tttttga-taaatctcgaccttggaaacaatagtttttctggagaaatcccaccggagttgggtcagttgctacaactgcaacacctttatctccttaat 10563115  T
Q  208 aactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattg 307  Q
    |||||  ||||||||||||||||||||||| | ||||||||||||||||||| ||| |||  ||||||||||||||| || | ||| |||||||||||||    
T  10563116 aactcgtttgtaggagaaattcctacaaacttgacatattgctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattg 10563215  T
Q  308 aaattgcctcgttgaaaaaacttcaatcatt 338  Q
    |||||| ||| |||||||| ||||| |||||    
T  10563216 aaattggctctttgaaaaagcttcattcatt 10563246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 10749336 - 10749010
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctca 106  Q
    ||||||||||||||||  | ||||||| |||||||||||||||||||| |||||||||| || || ||||||||  |||||||| |||||||||||||||    
T  10749336 catggaatcacatgcaaacccatgcatgaaagagttacaaagttgaacttagaaggatatcatttacatggatctttatcaccccatgttggcaatctca 10749237  T
Q  107 cttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaa 206  Q
    ||||| | ||  |  | ||  |    ||||||   || | ||| ||||| ||| | |||||||||  |||| |||||||||||||||||   || | |||    
T  10749236 cttttctcacaaatctaaacattggaaacaatgacttccttggagaaatcccagaagagttgggtcggttgctacaattgcaacaacttgatctcatcaa 10749137  T
Q  207 taactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaatt 306  Q
    ||||||  | | ||||||||||||| ||||| | ||||||||||||||||||||||  ||  || |||||||||||||| | | ||| ||||||||||||    
T  10749136 taactcgttcgcaggagaaattccttcaaacttgacatattgctccaatctcaaaggcttaaatgtgggagggaacaatgtgattggcaaaataccaatt 10749037  T
Q  307 gaaattgcctcgttgaaaaaacttcaa 333  Q
    ||||||| ||| |||||||| ||||||    
T  10749036 gaaattggctctttgaaaaagcttcaa 10749010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 10743022 - 10742691
Alignment:
Q  8 atggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctcac 107  Q
    |||||||||||||||  | ||||||||||||||||| | ||||| |||||| | | || |  || || |||    |||| ||| ||||||||||||||||    
T  10743022 atggaatcacatgcaaccccatgcatcaaagagttatagagttggacctaggaagttatcgcttacaaggacgtttatccccccatgttggcaatctcac 10742923  T
Q  108 ttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaat 207  Q
    |||| |||   || |||| ||    ||||| | |||  |||| ||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||  |||    
T  10742922 ttttctgataaaactcaaacttgaaaacaacacattctatggagaaattccacaagagttgggtcagttgctacaattgcaacaactttttcttactaat 10742823  T
Q  208 aactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattg 307  Q
    |||||| ||| ||| ||||||||||||||| | ||||||||||| ||||| ||||   |   ||||| ||||||||| || | ||| |||||||||||||    
T  10742822 aactcttttgcaggtgaaattcctacaaacttgacatattgctcaaatctgaaagtcataactttggcagggaacaagttgattggcaaaataccaattg 10742723  T
Q  308 aaattgcctcgttgaaaaaacttcaatcattg 339  Q
    |||||| ||  |||||||||||||||||||||    
T  10742722 aaattggctatttgaaaaaacttcaatcattg 10742691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 7190891 - 7190998
Alignment:
Q  8 atggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctcac 107  Q
    |||||||||||||||||| |||||||||||||||| |  |||| ||| | |||||||| ||  |||||||||  ||||| ||| |||||||||||||| |    
T  7190891 atggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctctc 7190990  T
Q  108 ttttttga 115  Q
    ||||||||    
T  7190991 ttttttga 7190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 19608186 - 19608107
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatc 86  Q
    ||||||||||||||||| | ||||||||||||||||| | | ||||||||| |||||||  |||||||||||||||||||    
T  19608186 catggaatcacatgcagccccatgcatcaaagagttatagaattgaacctacaaggatatgaattgcatggatcaatatc 19608107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 9838649 - 9838551
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctc 105  Q
    ||||||||||||||||  | ||||||||||||||||||||| |||||| || |||||||  | ||||||||||| || ||||| ||  |||||||||||    
T  9838649 catggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatggatccatgtcaccttacattggcaatctc 9838551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 10602642 - 10602739
Alignment:
Q  8 atggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctc 105  Q
    ||||||||| |||| ||| || |||||||||||||||||| |||||  |  |||| ||  ||||||||||||||||||| || ||| |||||||||||    
T  10602642 atggaatcatatgcggtcccaagcatcaaagagttacaaacttgaagttgcaagggtacaaattgcatggatcaatatctccgtatattggcaatctc 10602739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 313
Target Start/End: Original strand, 10548894 - 10548987
Alignment:
Q  220 ggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattg 313  Q
    |||||||||||||||||| | ||| |||| | ||| || ||| | || |  ||| ||||||||||||| | |||||||||||||||||||||||    
T  10548894 ggagaaattcctacaaacttgacaaattgtttcaaccttaaatacttatccttgagagggaacaatttgattggaaaaataccaattgaaattg 10548987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 10662391 - 10662298
Alignment:
Q  22 agtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctcacttttttga 115  Q
    ||||||||||| |||||||||| | ||||  || |||| |||||  | ||||||||||  ||||| ||| |||||||||||||| |||||||||    
T  10662391 agtctcatgcaacaaagagttatagagttagacttagatggatataacttgcatggattcatatctccccatgttggcaatctctcttttttga 10662298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 10590747 - 10590651
Alignment:
Q  8 atggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatct 104  Q
    ||||||||| |||||||| || ||||||||||||||| |||||||| ||   ||||||  | ||||||||||| ||||| || ||| |||| |||||    
T  10590747 atggaatcatatgcagtcccaagcatcaaagagttaccaagttgaagctgtcaggatacaagttgcatggatccatatctccatatattggtaatct 10590651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 10578897 - 10578992
Alignment:
Q  9 tggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatct 104  Q
    |||||||  |||||||| || |||||||||| |||| ||||| || ||   ||||||| | ||||||||||| ||||| || ||||||||||||||    
T  10578897 tggaatcgtatgcagtcccaagcatcaaagatttaccaagttaaagctgccaggataaaagttgcatggatccatatctccatatgttggcaatct 10578992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 10598977 - 10599022
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttga 52  Q
    |||||||||| ||||| || || |||||||||||||||||||||||    
T  10598977 catggaatcatatgcaatcccaagcatcaaagagttacaaagttga 10599022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 151 - 333
Target Start/End: Original strand, 12930308 - 12930490
Alignment:
Q  151 gaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgct 250  Q
    ||||||||||||||||||||| ||||| |||| |||||||| ||| | || | |||||| ||| ||||||| || |||||||||||||| ||||||||||    
T  12930308 gaaattccacaggagttgggtcagttgctacatttgcaacatcttattctcaccaataattcttttgtaggtgagattcctacaaacctgacatattgct 12930407  T
Q  251 ccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaa 333  Q
    |||||||||||   |||||||||   |||||| || | ||||| ||||||||||||||||||| ||| |||||||| ||||||    
T  12930408 ccaatctcaaattattgtatttgaatgggaaccatctcaatggtaaaataccaattgaaattggctctttgaaaaagcttcaa 12930490  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 333
Target Start/End: Original strand, 12956110 - 12956292
Alignment:
Q  151 gaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgct 250  Q
    ||||||||||||||||||||| ||||| |||| ||||||| |||||  || |||||||||||| ||||||| || ||||| |||||| | ||||||||||    
T  12956110 gaaattccacaggagttgggtcagttgctacatttgcaacgactttctctcagcaataactcttttgtaggtgagattccaacaaacttgacatattgct 12956209  T
Q  251 ccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaa 333  Q
    |||||||||||   |||| ||||   |||||| || | ||||| |||||||||| |||||| | ||| |||||||| ||||||    
T  12956210 ccaatctcaaattattgtttttgaatgggaaccatctcaatggtaaaataccaactgaaatcggctctttgaaaaagcttcaa 12956292  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 151 - 333
Target Start/End: Original strand, 12905218 - 12905400
Alignment:
Q  151 gaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgct 250  Q
    |||||||| ||||| |||||| ||||| |||| |||||||||||| | || |||||||| ||| ||||||| || |||||||||||||| ||||||||||    
T  12905218 gaaattcctcaggatttgggtcagttgctacatttgcaacaacttattctcagcaataattcttttgtaggtgagattcctacaaacctgacatattgct 12905317  T
Q  251 ccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaa 333  Q
    ||||||||||    |||||||||   |||||| || | | ||| |||||||||| |||||| | ||| |||||||| ||||||    
T  12905318 ccaatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaagcttcaa 12905400  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 311
Target Start/End: Original strand, 12946673 - 12946833
Alignment:
Q  151 gaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgct 250  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||||| || | |||||||||| ||| ||| || |||||||||||||| |||||||| |    
T  12946673 gaaattccacaggagttgggtcagttgctacatttgcaacaactttttctcaacaataactcttttgcaggtgagattcctacaaacctgacatattgtt 12946772  T
Q  251 ccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaat 311  Q
    |||| ||||||  ||||| |||| | |||||| || | |  || |||||||||| ||||||    
T  12946773 ccaaactcaaatttttgtttttgagtgggaaccatctcatcggtaaaataccaactgaaat 12946833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 151 - 336
Target Start/End: Original strand, 12897597 - 12897782
Alignment:
Q  151 gaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgct 250  Q
    |||||||| ||||| |||||| ||||| |||| |||||||| ||| | || | |||||| ||| ||||||| || |||||||||||||| ||||||||||    
T  12897597 gaaattcctcaggatttgggtcagttgctacatttgcaacaccttattctcaccaataattcttttgtaggtgagattcctacaaacctgacatattgct 12897696  T
Q  251 ccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatca 336  Q
    ||||||||||    |||||||||   |||||| || | | ||| |||||||||| |||| | | ||| |||||||| |||||||||    
T  12897697 ccaatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaattcggctctttgaaaaagcttcaatca 12897782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 12897453 - 12897557
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctca 106  Q
    ||||||||||||||||| | ||||||| || |||||||| |||||| |||| || |||| || || ||||||||  |||| ||| ||||| |||||||||    
T  12897453 catggaatcacatgcagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatgtttgcaatctca 12897552  T
Q  107 ctttt 111  Q
    |||||    
T  12897553 ctttt 12897557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 12905074 - 12905178
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctca 106  Q
    ||||||||||||||||| | ||||||| || |||||||| |||||| ||||||| |||| || || ||||||||  |||| ||| |||||  ||||||||    
T  12905074 catggaatcacatgcagccccatgcatgaacgagttacagagttgagcctagaaagatatcagttacatggatctttatctccccatgtttccaatctca 12905173  T
Q  107 ctttt 111  Q
    |||||    
T  12905174 ctttt 12905178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 12955969 - 12956070
Alignment:
Q  10 ggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctcactt 109  Q
    |||||||||||||| | ||||||| || |||||||| |||||| |||| || |||| || || ||||||||  |||| ||| ||||| ||||||||||||    
T  12955969 ggaatcacatgcagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatgtttgcaatctcactt 12956068  T
Q  110 tt 111  Q
    ||    
T  12956069 tt 12956070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 12930164 - 12930268
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctca 106  Q
    |||||||||||||| || | ||||||| || |||||||| |||||| |||| || |||| || || ||||||||  |||| ||| ||||| |||||||||    
T  12930164 catggaatcacatgtagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatgtttgcaatctca 12930263  T
Q  107 ctttt 111  Q
    |||||    
T  12930264 ctttt 12930268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 12946529 - 12946633
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctca 106  Q
    ||||||||||||||||| | ||||||| || |||||||| ||||||  |||||| |||| || || ||||||||  |||| ||| |||||  ||||||||    
T  12946529 catggaatcacatgcagccccatgcatgaacgagttacacagttgactctagaaagatatcagttacatggatctttatctccccatgtttccaatctca 12946628  T
Q  107 ctttt 111  Q
    |||||    
T  12946629 ctttt 12946633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 151 - 333
Target Start/End: Complemental strand, 17925583 - 17925401
Alignment:
Q  151 gaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgct 250  Q
    ||||||||||||||||||||| ||||| |||| ||||| |||||||| || |||||||| ||| ||||||| || |||||||||||||| |||||||| |    
T  17925583 gaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctgacatattgtt 17925484  T
Q  251 ccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaa 333  Q
    | |||||||||   |||| |||| | |||||| || | | ||| |||||||||| |||||| | ||| |||||||||||||||    
T  17925483 ctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaa 17925401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 17925727 - 17925619
Alignment:
Q  7 catggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctca 106  Q
    ||||||||||||||||| | ||||||| || |||||||| |||||| |||| || |||| || || ||||||||  |||| ||| ||||| |||||||||    
T  17925727 catggaatcacatgcagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatgtttgcaatctca 17925628  T
Q  107 cttttttga 115  Q
    ||||| |||    
T  17925627 cttttctga 17925619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 31469460 - 31469350
Alignment:
Q  27 catgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaat 126  Q
    |||| |||||||||||||| | ||||| |||||||||||  | ||||||||||| |||||||| |||||||| |||||| ||||||||||  | || |||    
T  31469460 catgaatcaaagagttacagaattgaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctcttttttgacaaacttgaat 31469361  T
Q  127 ctcatgaacaa 137  Q
    |||||||||||    
T  31469360 ctcatgaacaa 31469350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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