View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_high_13 (Length: 351)
Name: NF3119_high_13
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 51526099 - 51526420
Alignment:
| Q |
4 |
aatccaccggcttttaaatgagtaacgtaacctataacctcaccaaagcgtcacttgcaatgcacctcccctataactacaaatatattatgtcatgttt |
103 |
Q |
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| T |
51526099 |
aatccaccggcttttaaatgagtaacgtaacctataacctcaccaaagcgtcacttgcaatgcacctcccctataactacaaacatattatgtcatgttt |
51526198 |
T |
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| Q |
104 |
tttggattaagctagcagcgcgcattttgtgactcaacgagagcta----------gaagtgaagagtgatactctaattcattcatttcggagcagatc |
193 |
Q |
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| T |
51526199 |
tttggattaagctagcagcgcgcattttgtgactcaacgagagctagaagtgaagtgaagtgaagagtgatactctaattcattcatttcggagcagatc |
51526298 |
T |
|
| Q |
194 |
caagtaaaacaagagtagcattaataattactaagttcaccagagagcaggtataatcaatcgaccttctttttccc-tttttcaaa-tccgaggtttga |
291 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| || |
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| T |
51526299 |
caagtaaaacaagagtagc---aataattgctaagttcaccagagagcaggtataatcaatcgaccttctttttcccatttttcaaattctgaggttcga |
51526395 |
T |
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| Q |
292 |
ataccaatcctttcatattgtaatg |
316 |
Q |
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||||||||||||||||||||||||| |
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| T |
51526396 |
ataccaatcctttcatattgtaatg |
51526420 |
T |
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