View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119_high_15 (Length: 311)

Name: NF3119_high_15
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119_high_15
NF3119_high_15
[»] chr3 (1 HSPs)
chr3 (21-311)||(11573703-11573993)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 11573993 - 11573703
Alignment:
Q  21 agttcggcaatataacagcctacatgcaaccatgacagcagccaacaacacagacgcaactgctacaacagaaaaccgatgcgccaacagtggccaaaca 120  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||  | ||||||    
T  11573993 agttcggcaatatgacagcctacatgcgaccatgacagcagccaacaacacagacgcagctgcttcaacagaaaaccgatgcaccaacagcagtcaaaca 11573894  T
Q  121 aattcgccagcagcagctaccctcctatgaaatcacggctagctaataaaacagttccttggattccaacacaattcataatataaacaagagggaatct 220  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11573893 aattcgacagcagcagctcccctcctatgaaatcacgtctagctaataaaacagttccttggattccaacacaattcataatataaacaagagggaatct 11573794  T
Q  221 tcaatcttatgcttcttcaaccccatttctaggataaatcacgggtacctaaattcaaatttacactaaggttcaataatagtccatgtga 311  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11573793 tcaatcttatgcttcttcaaccccatttctaggacaaatcacgggtacctaaattcaaatttacactaaggttcaataatagaccatgtga 11573703  T

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