View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3119_high_2 (Length: 504)
Name: NF3119_high_2
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 33141042 - 33140569
Alignment:
| Q |
18 |
tatccaacaattcagaaactacaaaagaaagacagaaacaattaccataaagacttcaagccgcttagaaccaattgaactcattccggcaacagcttta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33141042 |
tatccaacaattcagaaactacaaaagaaagacaggaacaattaccataaagacttcaagccgcttagaaccaattgaactcattccagcaacagcttta |
33140943 |
T |
|
| Q |
118 |
cgcgcagcaggagataatttattctgacaaaccataatcccattatcaacattctccttcaacatcctattaataatacctctaacaatattaacaccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33140942 |
cgcgcagcaggagataatttattctgacaaaccataatcccattatcaacattctccttcaacatcctattaataatacctctaacaatattaacaccaa |
33140843 |
T |
|
| Q |
218 |
gtttagcatcatcaaagaagaacacacagattttttcagatgtcttgtttctatgtgttgtgttgatttctaactgttctcgtttcatgtgttcgccgaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33140842 |
gtttagcatcatcaaagaagaacacacagattttttcagataggttgtttctatgtgttgtgttgatttctaactgttctcgtttcatgtgttcgccgaa |
33140743 |
T |
|
| Q |
318 |
tttgaagatgaaatcttctcgagacatggtgagttgggtttcgtcgacgaggtagtttctgtcgaatagcatttggagaatggttttgcggattctgtat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33140742 |
tttgaagatgaaatcttctcgagacatggtaagttgggtttcgtcgacgaggtagtttctgtcgaatagcatttggagaatggttttgcggattctgtat |
33140643 |
T |
|
| Q |
418 |
agttttgttatgtcttcatcggtaaacaccattgttgaacctttgcgtcggctgttcttttgttatcgcagttc |
491 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33140642 |
agttttgttatgtcttcttcggtaaacaccattgttgaacctttgcgtcggctgttcttttgttatcgcagttc |
33140569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 38 - 451
Target Start/End: Complemental strand, 33135137 - 33134724
Alignment:
| Q |
38 |
acaaaagaaagacagaaacaattaccataaagacttcaagccgcttagaaccaattgaactcattccggcaacagctttacgcgcagcaggagataattt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||||||||| ||||||||||||| |||||||||| | | |||||| | | ||| | |||||||||| |
|
|
| T |
33135137 |
acaaaacaaagagagaaacaattaccagaaagacttcaaggcgcttagaaccaactgaactcatttcagtaacagcacttctagcataatgagataattt |
33135038 |
T |
|
| Q |
138 |
attctgacaaaccataatcccattatcaacattctccttcaacatcctattaataatacctctaacaatattaacaccaagtttagcatcatcaaagaag |
237 |
Q |
| |
|
| |||||||||||| ||||||| ||||||||||||| | |||||||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
33135037 |
agtctgacaaaccaaaatcccactatcaacattctcttgcaacatcctagtaataaaacctctaacaatcttaacaccaagtttagcatcatcagagaag |
33134938 |
T |
|
| Q |
238 |
aacacacagattttttcagatgtcttgtttctatgtgttgtgttgatttctaactgttctcgtttcatgtgttcgccgaatttgaagatgaaatcttctc |
337 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
33134937 |
aaaacacagattttttcagatgggttgtttctatgtgttttgttgatttctaactgttctcgtttcatgtgttcgccgtatttgaagatgaaatcttcac |
33134838 |
T |
|
| Q |
338 |
gagacatggtgagttgggtttcgtcgacgaggtagtttctgtcgaatagcatttggagaatggttttgcggattctgtatagttttgttatgtcttcatc |
437 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||||| | ||||||||||||||||| || |
|
|
| T |
33134837 |
gagacatggtgagttcggtttcttcgacgaggtagtttctgtcggataacatttggagaagggttttctggattctgaaaagttttgttatgtcttcttc |
33134738 |
T |
|
| Q |
438 |
ggtaaacaccattg |
451 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
33134737 |
ggaaaacaccattg |
33134724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University