View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3119_high_20 (Length: 254)
Name: NF3119_high_20
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 11155125 - 11154894
Alignment:
| Q |
28 |
aagtgtatatatgaatagataaggtaaaataattgaataaaagcgcgataaaaacgtaccttgccaactttagcgacttctaaagaagctttttcgagaa |
127 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155125 |
aagtgtatatatgaatagataaggtcaaataattgaataaaagcgcgataaaaacgtaccttgccaactttagcgacttctaaagaagctttttcgagaa |
11155026 |
T |
|
| Q |
128 |
tgaatataacactttgtttctcgctattattttcattcaaaggagcaattggaataccaggaagttcagattcctctg---------------ttggagc |
212 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11155025 |
tgaatataacactttgtttctcgttattcttttcacttaaaggagcaattggaataccaggaagttcagattcctctgttgttgttgttgctattggagc |
11154926 |
T |
|
| Q |
213 |
actttgttcatcgttctgaagatttggtttct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11154925 |
actttgttcatcgttctgaagatttggtttct |
11154894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 31 - 244
Target Start/End: Original strand, 43951963 - 43952180
Alignment:
| Q |
31 |
tgtatatatgaatagataaggtaaaataattgaataaaagcgcgataaaaacg----taccttgccaactttagcgacttctaaagaagctttttcgaga |
126 |
Q |
| |
|
||||||||| |||| ||||| | |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43951963 |
tgtatatatcaataaataagatcaaataattcaataaaaagacgataaaaacgaaagtaccttgccaactttagcgacttctaaagaagctttttcgaga |
43952062 |
T |
|
| Q |
127 |
atgaatataacactttgtttctcgctattattttcattcaaaggagcaattggaataccaggaagttcagattcctctgttggagcactttgttcatcgt |
226 |
Q |
| |
|
||||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
43952063 |
atgaatataacaccttgtttctcactgttcttttcattcaaaggagcaattggaataccaggaagttcagattcctctgttggcgcacttggttcatcgt |
43952162 |
T |
|
| Q |
227 |
tctgaagatttggtttct |
244 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
43952163 |
tatgaagatttggtttct |
43952180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University