View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_high_3 (Length: 501)
Name: NF3119_high_3
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 31009820 - 31009429
Alignment:
| Q |
20 |
gccgacataggccaaaacgacgcaacaggaacatttctcttattggcaactcttataacccaaaacaaataactatcatgtataatcacattcggtgctg |
119 |
Q |
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| T |
31009820 |
gccgacataggccaaaacgacgcaacaggaacatttctcttattggcaactcttataacccaaaacaaataactatcatgtataatcacattcggtgctg |
31009721 |
T |
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| Q |
120 |
tctcaagtgaatcaagtagtttctcaaacgggtcttccattttggtcacaacagcttcgagaaaattaagaaaatcttttgctcgaccttcttcggaggg |
219 |
Q |
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| T |
31009720 |
tctcaagtgaatcaagtagtttctcaaacgggtcttccattttggtcacaacagcttcgagaaaattaagaaaatcttttcctcgaccttcttcggaggg |
31009621 |
T |
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| Q |
220 |
aattacgtttggaatggtggcaaatttgatgtttttgttgtttggttttggtgagtcggagttgatgatggtgagccattcttctgtgacaacaaaggta |
319 |
Q |
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| T |
31009620 |
aattacgtttggaatggtggcaaatttgatgtttttgttgtttggttttggtgagtcggagttgatgatggtgagccattcttctgtgacaacaaaggta |
31009521 |
T |
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| Q |
320 |
acaacgatgttggggttgttggagatgaggagtttgcataggttcatcattggattgatgtggcctcgacctgggtatggtacggctactat |
411 |
Q |
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| T |
31009520 |
acaacgatgttggggttgttggagatgaggagtttgcataggttcatcattgggttgatgtggcctcgacctgggtatggtacggctactat |
31009429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 386
Target Start/End: Complemental strand, 31004522 - 31004431
Alignment:
| Q |
295 |
ccattcttctgtgacaacaaaggtaacaacgatgttggggttgttggagatgaggagtttgcataggttcatcattggattgatgtggcctc |
386 |
Q |
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| T |
31004522 |
ccattcttcggtgacaataaatgtaacaaggatgttgttgttcttggagataaggagcttgcataggttcatcattgggttgatgtggcctc |
31004431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 32077180 - 32077274
Alignment:
| Q |
293 |
agccattcttctgtgacaacaaaggtaacaacgatgttggggttgttggagatgaggagtttgcataggttcatcattggattgatgtggcctcg |
387 |
Q |
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| T |
32077180 |
agccattcttcagtgactacaaaggaaacatgaatgttgctattgttggagacaaggagtttgcagaggttcatcatagggttgatattgcctcg |
32077274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 26762191 - 26762103
Alignment:
| Q |
293 |
agccattcttctgtgacaacaaaggtaacaacgatgttggggttgttggagatgaggagtttgcataggttcatcattggattgatgtg |
381 |
Q |
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|||||||||| ||||||||||||||| |||| |||||| ||||| || |||| || | |||| |||||||||||| || |||||||| |
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| T |
26762191 |
agccattcttgtgtgacaacaaaggtgacaaggatgttagggttattagagacaagtaacttgcttaggttcatcatggggttgatgtg |
26762103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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