View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_high_30 (Length: 227)
Name: NF3119_high_30
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35843770 - 35843550
Alignment:
| Q |
1 |
ccaccgttgaccgggtgagctaactacaagtcttagtgaaagtaactgattctgatttatttatttctgtacctacttcaatctccgggagttaatgcac |
100 |
Q |
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| T |
35843770 |
ccaccgttgaccgggtgagctaactacaagtcatagtgaaagtaactgattctgatttatttatttctgtacctacttcaatctccgggagttaatgcac |
35843671 |
T |
|
| Q |
101 |
tttggtgtaaatattagtacttgtcacaatcaaatttctaaatattaatttctaacattctcaattactcacactctcaaaaaataattctcattttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35843670 |
tttggtgtaaatattagtacttgtcacaatcaaatttctaaatattaatttctaacattctcaattactcacactctcaaaaaataattctcattttctg |
35843571 |
T |
|
| Q |
201 |
tcttttttcaaattatattact |
222 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
35843570 |
tct-ttttcaaattatattact |
35843550 |
T |
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