View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_high_32 (Length: 210)
Name: NF3119_high_32
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 35651689 - 35651508
Alignment:
| Q |
16 |
caggatatggttgagattctaagagaggtagttgaatgttaaattagttatactgccaattcaatgttgaacaagtaccgaatagtgtgtggaggatcat |
115 |
Q |
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| T |
35651689 |
caggatatggttgaggttctaagagaggtagttgaatgttaaattagttatagtgtcaatttaatgttgaacaagtaccgaatagtgtgcgcaggatcat |
35651590 |
T |
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| Q |
116 |
tcgtggaattcacgtgaaaactttatcgtgtaaataagcattttccatatttaaataacaactcatctatatgttcacaggt |
197 |
Q |
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| T |
35651589 |
tcgtgggattcacgtgaaaactttgtcgtgtaaataagcattttccatatttaaataagaactcatctacatgtccacaggt |
35651508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 26157323 - 26157177
Alignment:
| Q |
16 |
caggatatggttgagattctaagagaggtagttgaatgttaaattagt----------tatactgccaattcaatgttgaacaagtaccgaatagtgtgt |
105 |
Q |
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| T |
26157323 |
caggatatggttgaggttttaagagaggtagttcaatgttaaattagttataggaggctatattgccaattcaatgttaaacaagtacc-------gtgt |
26157231 |
T |
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| Q |
106 |
ggaggatcattcgtggaattcacgtgaaaactttatcgtgtaaataagcatttt |
159 |
Q |
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| T |
26157230 |
gcatgatcattcgtgggattcacgcgaaaacgttgttgtgtaaataagcatttt |
26157177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 2217196 - 2217145
Alignment:
| Q |
16 |
caggatatggttgagattctaagagaggtagttgaatgttaaattagttata |
67 |
Q |
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| T |
2217196 |
caggatatgggtgaggttctaagagaggtcgttcaatgttaaattagttata |
2217145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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