View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3119_low_10 (Length: 390)
Name: NF3119_low_10
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 14490811 - 14490637
Alignment:
| Q |
14 |
gaaatgaaagccataatcctgaagtcataaaacttatgcactagaatgcaactacatcaaaattagaacttatacatcatctatattagtagacaagcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14490811 |
gaaatgaaagccataatcctgaagtcataaaacttatgcactagaatgcaactacatcaaaattagaacttatacatcatctatattagtagacaagcat |
14490712 |
T |
|
| Q |
114 |
gtgatttaatagtcaaacacaacaagagaaattaaagttttattttggggcaccaaggtatcatacaccaacatc |
188 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14490711 |
gtgatttaatagtcaaactcaacaaaagaaattaaagttttattttggggcaccaaggtatcatacaccaacatc |
14490637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 246 - 374
Target Start/End: Complemental strand, 14490572 - 14490444
Alignment:
| Q |
246 |
tcaatttctttcctctttaaacggttatgaatcatactttctactatacaatatctaaccattagtttaatatgataagtatgggaaagtgcccttacct |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14490572 |
tcaatttctttcctctttaaacggttatgaatcatactttctactctacaatatctaaccattagtttaatatgataagtatggagaagtgcccttacct |
14490473 |
T |
|
| Q |
346 |
tcgatgttttctctcctagtagaacaact |
374 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
14490472 |
ttgatgttttctctcctagtagaacaact |
14490444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 43656462 - 43656365
Alignment:
| Q |
248 |
aatttctttcctctttaaacggttatgaatcatactttctactatacaatatctaaccattagtttaatatgataagtatgggaaagtgcccttacct |
345 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
43656462 |
aatttcttttctctttaaacggttatggatcatactttctactctataatatataaccattagtttaatatgttaagtatggggaagtgcccttacct |
43656365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 43656673 - 43656524
Alignment:
| Q |
34 |
gaagtcataaaacttatgcactagaatgcaactacatcaaaattagaacttatacatcatctatattagtagacaagcatgtgatttaatagtcaaacac |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| | ||| ||| || |||||||||| |
|
|
| T |
43656673 |
gaagtcataaaacttatgcactagaatgcaactacatctaaattagaacttatatatcatcta-attagtaaataagtccttga--caacagtcaaacac |
43656577 |
T |
|
| Q |
134 |
aacaagagaaattaaagttttattttggggcaccaaggtatcatacaccaacatc |
188 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
43656576 |
aacaaaggaaattaaagttttatttt-gagcacc-aggtatcatacaccaacatc |
43656524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 251 - 346
Target Start/End: Complemental strand, 25673228 - 25673133
Alignment:
| Q |
251 |
ttctttcctctttaaacggttatgaatcatactttctactatacaatatctaaccattagtttaatatgataagtatgggaaagtgcccttacctt |
346 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
|
|
| T |
25673228 |
ttcttttctttttaaacggttatgaatcatactttctactctataatatctaaccattagtctaatatgataagtatgaggaagtgcccttacctt |
25673133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 34161142 - 34161239
Alignment:
| Q |
248 |
aatttctttcctctttaaacggttatgaatcatactttctactatacaatatctaaccattagtttaatatgataagtatgggaaagtgcccttacct |
345 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| | |||||||| || |||| |||||||||||| ||||||||| |||||||| || | ||||||||| |
|
|
| T |
34161142 |
aatttcttctctctttaaacgattatgaatcacaatttctactttataatacctaaccattagtctaatatgattagtatggggaaatacccttacct |
34161239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University