View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_low_12 (Length: 358)
Name: NF3119_low_12
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 3282748 - 3283090
Alignment:
| Q |
1 |
attcagatttggtctagcgataatcaagttcaaattgattacttcttccaccacctcaaagtgatgacactctatcactgactagatgttgtgctgagta |
100 |
Q |
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| T |
3282748 |
attcagatttggtctagcgataatcaagttcaaattgattacttcttccaccacctcaaagtgatgacactctatcactgactagatgttgtgctgagta |
3282847 |
T |
|
| Q |
101 |
tctgcaacatacaagatctaaattatcaatagactctatgagaatgttgaaaattcaaagct--nnnnnnnnnnnnnnctagctaagatgttgagtcgag |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
3282848 |
tctgcaacatacaagatctaaattatcaatagactctatgagaatgttgaaaattcgaagctaaaaaaaaaaaaaaaactagctaagatgttgagtcgag |
3282947 |
T |
|
| Q |
199 |
tatatatgtacaatttacaagacctaaattatcaatagactcattgaaaacgttgaaaattcgacctaa-gttgctcctccgatttgaacacttagagga |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |
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| T |
3282948 |
tatatatgtacaatttacaagacctaaattatcaatagactcattgaaaacgttgaaaattcgacctaaggttgctactccaatttgaacacttagagga |
3283047 |
T |
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| Q |
298 |
gctcatgtatcaatcactttgattcctctctttaggccagtag |
340 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3283048 |
gctcatgtatcaatcactttgattcctctctttaggccagtag |
3283090 |
T |
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