View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_low_16 (Length: 308)
Name: NF3119_low_16
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 78 - 293
Target Start/End: Complemental strand, 8060763 - 8060548
Alignment:
| Q |
78 |
atctaaaactcacaatttgaaaaactcaaaatatgaattgagagtttggattgttttagaagattttgaaatattcttcaannnnnnncatcttgcaaat |
177 |
Q |
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| T |
8060763 |
atctaaaactcacaatttgaaaaactcaaaatatgaattgagagtttggattgttttagaagattttcaaatattcttcaattcttttcatcttgcaaat |
8060664 |
T |
|
| Q |
178 |
attggtcttaagttttctctcaaaaatcctccaaatggataaaagattatcgtcccttgtccttcttcctgcttaaaattgtcccttttcctcaaactca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060663 |
attggtcttaagttttctctcaaaaatcctccaaatggataaaagattatcgtcccttttccttcttcctgcttaaaattgtcccttttcctcaaactca |
8060564 |
T |
|
| Q |
278 |
aacaaaaagtctaagt |
293 |
Q |
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|||||||||||||||| |
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| T |
8060563 |
aacaaaaagtctaagt |
8060548 |
T |
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