View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3119_low_18 (Length: 268)
Name: NF3119_low_18
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 43 - 265
Target Start/End: Complemental strand, 39883555 - 39883329
Alignment:
| Q |
43 |
agtcgagcttccgttgctcgtaaaatatgatccatctatattaagtttgaatcgcccaggaggatggacttaattaa----ttgatgtgcattattgatt |
138 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39883555 |
agtcgagcttccgttactcgtaaaatatgatccatctatattaagtttgaatcgcccaagaggatggacttaattatgcttttgatgtgcattattgatt |
39883456 |
T |
|
| Q |
139 |
ccctagatgccttgggcgcttgcaattttgttataatattatgacgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39883455 |
ccctagatgccttgggcgcttgcaattttgttacaatatcatgacgtgattgttaaccgaactccatagtttatctcccatatatgactgatgagaaaat |
39883356 |
T |
|
| Q |
239 |
atgagcatgttcatgtccttccaaaga |
265 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
39883355 |
atgagcatgttcatgtccttccaaaga |
39883329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 38250547 - 38250609
Alignment:
| Q |
48 |
agcttccgttgctcgtaaaatatgatccatctatattaagtttgaatcgcccaggaggatgga |
110 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||| ||||||| ||| ||| ||||||||| |
|
|
| T |
38250547 |
agcttccgacgctggtaaaatatgatccatctacattgagtttgagtcgtccaagaggatgga |
38250609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 42874702 - 42874636
Alignment:
| Q |
182 |
acgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaatatgagcatgt |
248 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||| || ||| |||| || ||||||||||||||||| |
|
|
| T |
42874702 |
acgttattgttaactgaattccatagtttatcttccatatttgaccaataagaaaatatgagcatgt |
42874636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 42874808 - 42874750
Alignment:
| Q |
37 |
accataagtcgagcttccgttgctcgtaaaatatgatccatctatattaagtttgaatc |
95 |
Q |
| |
|
|||||||| ||||||| | ||||| ||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
42874808 |
accataagccgagctttcattgcttgtaaaatatgatccatctaaattgagttcgaatc |
42874750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University