View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_low_22 (Length: 250)
Name: NF3119_low_22
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 6742255 - 6742026
Alignment:
| Q |
10 |
gcacagagcaagatattggaacgaagcaaggaaatatagtgtgaatagttcaatattagatgcaataaaattactcaattaattaatgatagataaatta |
109 |
Q |
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| T |
6742255 |
gcacaaagcaagttattggaacgaagcaaggaaatatagtgtgaatagttcaatattagatgcaataaaattactcaattaattaatgatagataaatta |
6742156 |
T |
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| Q |
110 |
tgtgcattgtgaaagactagagtcatttgttcatgtttgatagatcccaaaaaataactgtaaaagttctgtttgtttcaacatct--ccaaagaacttt |
207 |
Q |
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| T |
6742155 |
tgtgcattgtgaaagactagagtcatttgttcatgtttgatagatcccaaaaaataactgtaaaagttctgtttgtttcaacctctaaccaaagaacttt |
6742056 |
T |
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| Q |
208 |
ttaacttacacaagtgaatggggtgggaga |
237 |
Q |
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| T |
6742055 |
ttaacttacacaagtgaatggggtgggaga |
6742026 |
T |
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